Planaria EST Database


DrC_01735

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01735
         (754 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11930|NUD19_MOUSE  Nucleoside diphosphate-linked moiety ...    70   8e-12
sp|P91148|NDX7_CAEEL  Putative nudix hydrolase 7                   62   1e-09
sp|O83062|GRAD_TREPA  Putative greA-associated domains protein     32   1.8  
sp|Q81ZU6|GLGB_NITEU  1,4-alpha-glucan branching enzyme (Gly...    31   3.1  
sp|P04157|CD45_RAT  Leukocyte common antigen variant 4 precu...    31   3.1  
sp|P47326|OPPF_MYCGE  Oligopeptide transport ATP-binding pro...    30   5.3  
sp|P49333|ETR1_ARATH  Ethylene receptor                            30   7.0  
sp|P08575|CD45_HUMAN  Leukocyte common antigen precursor (L-...    30   7.0  
sp|Q9QYH1|MPP4_RAT  MAGUK p55 subfamily member 4 (Discs, lar...    30   9.1  
sp|O68429|TRPA_BUCDN  Tryptophan synthase alpha chain              30   9.1  
>sp|P11930|NUD19_MOUSE Nucleoside diphosphate-linked moiety X motif 19 (Nudix motif 19)
           (Testosterone-regulated RP2 protein) (Androgen regulated
           protein RP2)
          Length = 357

 Score = 69.7 bits (169), Expect = 8e-12
 Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 8/223 (3%)
 Frame = +3

Query: 21  EIFYRICAIRETFEETGILLAN--DEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIEL 194
           ++  RICAIRE FEE G+LL    D    S   +Q L       EW+ +V  D   F++L
Sbjct: 102 DVALRICAIREAFEEAGVLLLRPRDAAPASQEPSQALSPPAGLAEWRSRVRSDPRCFLQL 161

Query: 195 FKSYKLFPDLFSLYEWSEWLTPSFYHRQIH---TAFYMFITEIPLTTNQNEEESDMLTWN 365
                  PD+++L++W  WLTP  Y R I    T F++           +  E     W 
Sbjct: 162 CAHLDCTPDIWALHDWGGWLTP--YGRTIRRFDTTFFLCCLRDTPRVEPDVAEVVGYQWL 219

Query: 366 TPKELID-YYSLTKGIPTPQMSELFEMNILKSWRDVHTEAVKRQKCGGNDNVFFTIILSN 542
           +P E  + + S    +  PQ  E+  +    S   ++     R        +   ++ S+
Sbjct: 220 SPSEATECFLSKEIWLAPPQFYEMRRLENFASLSALYRFCSDRPSEVPEKWLPIILLTSD 279

Query: 543 GLLLALPGDSRY--PSEFNVDSVTMKYLSVEDISKDKYLRRTV 665
           G +  LPGD  Y   S+F   +++    + E + + K L R V
Sbjct: 280 GTIHLLPGDELYVKDSDFLEKNMSTDKKTEEIVKEGKVLNRVV 322
>sp|P91148|NDX7_CAEEL Putative nudix hydrolase 7
          Length = 295

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 2/207 (0%)
 Frame = +3

Query: 30  YRICAIRETFEETGILLANDEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIELFKSYK 209
           +RI A+RE FEE+G+L   + +  S  NN ++         +  ++ D + F +L  S  
Sbjct: 60  FRIAAVRELFEESGVLSTKNGWQTSA-NNPDM------TSLKADIVNDTSKFEQL--SGT 110

Query: 210 LFPDLFSLYEWSEWLTPSFYHRQIHTAFYMFITEIPLTTNQNEEESDMLTWNTPKELID- 386
           +  D  +L EW  ++TP+ Y R+  T FY+ + +     +    E     W  PKE +D 
Sbjct: 111 ICAD--NLIEWDTFITPANYPRRFLTKFYLMLVDDEPAIDLCTSEMSEYNWIEPKECVDE 168

Query: 387 YYSLTKGIPTPQMSELFEMNILKSWRDVHTEA-VKRQKCGGNDNVFFTIILSNGLLLALP 563
            Y+    +P PQ+ EL  ++ +K W        VK+  C          +++N      P
Sbjct: 169 AYAGKYALPPPQVYELTRLSQVKDWDLCEKYGNVKKPICPQPIKTIGENLITN----CFP 224

Query: 564 GDSRYPSEFNVDSVTMKYLSVEDISKD 644
           GD  Y  E ++    ++ +S + ++ D
Sbjct: 225 GDYMYIDENSLQQ-PLRQMSADRVTVD 250
>sp|O83062|GRAD_TREPA Putative greA-associated domains protein
          Length = 657

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query: 99  KSILNNQNLLDDIMKN-EWQRKVLK---DGNLFIELFKSYKLFPDLFSLYEWSEWLT 257
           KS+L  Q+L   I ++ EW  KV+    D N  ++  K  +L P L S+ EW+ W T
Sbjct: 346 KSVLKRQDLAAKIRQDPEWALKVIITSFDNNCNLKKVKQ-ELVPSLLSVGEWTSWST 401
>sp|Q81ZU6|GLGB_NITEU 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 734

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
 Frame = +3

Query: 414 TPQMSELFEMNILKSWRDVHT--EAVKRQKCGGNDNVF------FTIILSNGLLLALPGD 569
           TP + EL       SW D H   ++V   +    D  F      FT IL  G  + +PG 
Sbjct: 619 TPALHELDFFAEGFSWIDCHDVEQSVISYQRHARDGSFVLVVLNFTPILRTGYRVGIPGS 678

Query: 570 SRYPSEFNVDSV 605
           S Y   FN DS+
Sbjct: 679 SAYQEVFNSDSI 690
>sp|P04157|CD45_RAT Leukocyte common antigen variant 4 precursor (L-CA) (CD45) (T200)
          Length = 1255

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = +3

Query: 24  IFYRICAIRE----TFEETGILLANDEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIE 191
           + Y+I  +R+      +E   L+  DE  K ++N   +  D++   ++RK+  +G LF+ 
Sbjct: 548 VLYKIYDLRKKRSSNLDEQQELVERDE-EKQLINVDPIHSDLLLETYKRKIADEGRLFLA 606

Query: 192 LFKSYKLFPDLFSLY 236
            F+S    P +FS +
Sbjct: 607 EFQS---IPRVFSKF 618
>sp|P47326|OPPF_MYCGE Oligopeptide transport ATP-binding protein oppF
          Length = 848

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +3

Query: 75  LLANDEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIELFKSYKLFP 218
           LL    + K    N  L DDI    +   V K  NL + L K YKL P
Sbjct: 297 LLTTKSYIKDSKQNMQLTDDIFAFSYNSMVDKKRNLVLILSKYYKLLP 344
>sp|P49333|ETR1_ARATH Ethylene receptor
          Length = 738

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +3

Query: 30  YRICAIRETFEETGILLANDEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIEL--FKS 203
           + I A+    +ET +        ++IL + NLL  +M +      L+DG+L +EL  F  
Sbjct: 360 HAIIALSSLLQETELTPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNL 419

Query: 204 YKLFPDLFSL 233
           + LF ++ +L
Sbjct: 420 HTLFREVLNL 429
>sp|P08575|CD45_HUMAN Leukocyte common antigen precursor (L-CA) (CD45 antigen) (T200)
          Length = 1304

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +3

Query: 60  EETGILLANDEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIELFKSYKLFPDLFSLYE 239
           E+  ++  +DE  K ++N + +  DI+   ++RK+  +G LF+  F+S    P +FS + 
Sbjct: 612 EQQELVERDDE--KQLMNVEPIHADILLETYKRKIADEGRLFLAEFQS---IPRVFSKFP 666

Query: 240 WSEWLTP 260
             E   P
Sbjct: 667 IKEARKP 673
>sp|Q9QYH1|MPP4_RAT MAGUK p55 subfamily member 4 (Discs, large homolog 6) (rDLG6)
          Length = 441

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 28/103 (27%), Positives = 42/103 (40%)
 Frame = +3

Query: 420 QMSELFEMNILKSWRDVHTEAVKRQKCGGNDNVFFTIILSNGLLLALPGDSRYPSEFNVD 599
           Q ++   + +L     V    ++RQ  G N + F +         A+P  +R P  + +D
Sbjct: 227 QPADKHRLIVLVGPSGVGVNELRRQLIGCNPSCFQS---------AVPHTTRSPKSYEMD 277

Query: 600 SVTMKYLSVEDISKDKYLRRTVFFDGEYVFHHNLNS*NCVFAV 728
                Y+S E      Y  R + F GEY  H    S N V AV
Sbjct: 278 GREYHYVSRETFESLMYGHRMLEF-GEYKGHLYGTSVNAVLAV 319
>sp|O68429|TRPA_BUCDN Tryptophan synthase alpha chain
          Length = 270

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -1

Query: 559 NASNNPFDRIIVKKTLSFPPHFCRFTASV*TSLHDFKIFISNNSDI*GVGIP 404
           N   N FDR+  +K   F P       S+ TSL    I I N +D   +GIP
Sbjct: 2   NRYENIFDRLSQRKEGCFVPFVVLGDPSLDTSLKIINILIQNGADALELGIP 53
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,022,554
Number of Sequences: 369166
Number of extensions: 1892957
Number of successful extensions: 4679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4674
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)