Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_G13
(754 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11930|NUD19_MOUSE Nucleoside diphosphate-linked moiety ... 70 8e-12
sp|P91148|NDX7_CAEEL Putative nudix hydrolase 7 62 1e-09
sp|O83062|GRAD_TREPA Putative greA-associated domains protein 32 1.8
sp|Q81ZU6|GLGB_NITEU 1,4-alpha-glucan branching enzyme (Gly... 31 3.1
sp|P04157|CD45_RAT Leukocyte common antigen variant 4 precu... 31 3.1
sp|P47326|OPPF_MYCGE Oligopeptide transport ATP-binding pro... 30 5.3
sp|P49333|ETR1_ARATH Ethylene receptor 30 7.0
sp|P08575|CD45_HUMAN Leukocyte common antigen precursor (L-... 30 7.0
sp|Q9QYH1|MPP4_RAT MAGUK p55 subfamily member 4 (Discs, lar... 30 9.1
sp|O68429|TRPA_BUCDN Tryptophan synthase alpha chain 30 9.1
>sp|P11930|NUD19_MOUSE Nucleoside diphosphate-linked moiety X motif 19 (Nudix motif 19)
(Testosterone-regulated RP2 protein) (Androgen regulated
protein RP2)
Length = 357
Score = 69.7 bits (169), Expect = 8e-12
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 8/223 (3%)
Frame = +3
Query: 21 EIFYRICAIRETFEETGILLAN--DEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIEL 194
++ RICAIRE FEE G+LL D S +Q L EW+ +V D F++L
Sbjct: 102 DVALRICAIREAFEEAGVLLLRPRDAAPASQEPSQALSPPAGLAEWRSRVRSDPRCFLQL 161
Query: 195 FKSYKLFPDLFSLYEWSEWLTPSFYHRQIH---TAFYMFITEIPLTTNQNEEESDMLTWN 365
PD+++L++W WLTP Y R I T F++ + E W
Sbjct: 162 CAHLDCTPDIWALHDWGGWLTP--YGRTIRRFDTTFFLCCLRDTPRVEPDVAEVVGYQWL 219
Query: 366 TPKELID-YYSLTKGIPTPQMSELFEMNILKSWRDVHTEAVKRQKCGGNDNVFFTIILSN 542
+P E + + S + PQ E+ + S ++ R + ++ S+
Sbjct: 220 SPSEATECFLSKEIWLAPPQFYEMRRLENFASLSALYRFCSDRPSEVPEKWLPIILLTSD 279
Query: 543 GLLLALPGDSRY--PSEFNVDSVTMKYLSVEDISKDKYLRRTV 665
G + LPGD Y S+F +++ + E + + K L R V
Sbjct: 280 GTIHLLPGDELYVKDSDFLEKNMSTDKKTEEIVKEGKVLNRVV 322
>sp|P91148|NDX7_CAEEL Putative nudix hydrolase 7
Length = 295
Score = 62.4 bits (150), Expect = 1e-09
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 2/207 (0%)
Frame = +3
Query: 30 YRICAIRETFEETGILLANDEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIELFKSYK 209
+RI A+RE FEE+G+L + + S NN ++ + ++ D + F +L S
Sbjct: 60 FRIAAVRELFEESGVLSTKNGWQTSA-NNPDM------TSLKADIVNDTSKFEQL--SGT 110
Query: 210 LFPDLFSLYEWSEWLTPSFYHRQIHTAFYMFITEIPLTTNQNEEESDMLTWNTPKELID- 386
+ D +L EW ++TP+ Y R+ T FY+ + + + E W PKE +D
Sbjct: 111 ICAD--NLIEWDTFITPANYPRRFLTKFYLMLVDDEPAIDLCTSEMSEYNWIEPKECVDE 168
Query: 387 YYSLTKGIPTPQMSELFEMNILKSWRDVHTEA-VKRQKCGGNDNVFFTIILSNGLLLALP 563
Y+ +P PQ+ EL ++ +K W VK+ C +++N P
Sbjct: 169 AYAGKYALPPPQVYELTRLSQVKDWDLCEKYGNVKKPICPQPIKTIGENLITN----CFP 224
Query: 564 GDSRYPSEFNVDSVTMKYLSVEDISKD 644
GD Y E ++ ++ +S + ++ D
Sbjct: 225 GDYMYIDENSLQQ-PLRQMSADRVTVD 250
>sp|O83062|GRAD_TREPA Putative greA-associated domains protein
Length = 657
Score = 32.0 bits (71), Expect = 1.8
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +3
Query: 99 KSILNNQNLLDDIMKN-EWQRKVLK---DGNLFIELFKSYKLFPDLFSLYEWSEWLT 257
KS+L Q+L I ++ EW KV+ D N ++ K +L P L S+ EW+ W T
Sbjct: 346 KSVLKRQDLAAKIRQDPEWALKVIITSFDNNCNLKKVKQ-ELVPSLLSVGEWTSWST 401
>sp|Q81ZU6|GLGB_NITEU 1,4-alpha-glucan branching enzyme (Glycogen branching enzyme) (BE)
(1,4-alpha-D-glucan:1,4-alpha-D-glucan
6-glucosyl-transferase)
Length = 734
Score = 31.2 bits (69), Expect = 3.1
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Frame = +3
Query: 414 TPQMSELFEMNILKSWRDVHT--EAVKRQKCGGNDNVF------FTIILSNGLLLALPGD 569
TP + EL SW D H ++V + D F FT IL G + +PG
Sbjct: 619 TPALHELDFFAEGFSWIDCHDVEQSVISYQRHARDGSFVLVVLNFTPILRTGYRVGIPGS 678
Query: 570 SRYPSEFNVDSV 605
S Y FN DS+
Sbjct: 679 SAYQEVFNSDSI 690
>sp|P04157|CD45_RAT Leukocyte common antigen variant 4 precursor (L-CA) (CD45) (T200)
Length = 1255
Score = 31.2 bits (69), Expect = 3.1
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 24 IFYRICAIRE----TFEETGILLANDEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIE 191
+ Y+I +R+ +E L+ DE K ++N + D++ ++RK+ +G LF+
Sbjct: 548 VLYKIYDLRKKRSSNLDEQQELVERDE-EKQLINVDPIHSDLLLETYKRKIADEGRLFLA 606
Query: 192 LFKSYKLFPDLFSLY 236
F+S P +FS +
Sbjct: 607 EFQS---IPRVFSKF 618
>sp|P47326|OPPF_MYCGE Oligopeptide transport ATP-binding protein oppF
Length = 848
Score = 30.4 bits (67), Expect = 5.3
Identities = 18/48 (37%), Positives = 21/48 (43%)
Frame = +3
Query: 75 LLANDEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIELFKSYKLFP 218
LL + K N L DDI + V K NL + L K YKL P
Sbjct: 297 LLTTKSYIKDSKQNMQLTDDIFAFSYNSMVDKKRNLVLILSKYYKLLP 344
>sp|P49333|ETR1_ARATH Ethylene receptor
Length = 738
Score = 30.0 bits (66), Expect = 7.0
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 30 YRICAIRETFEETGILLANDEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIEL--FKS 203
+ I A+ +ET + ++IL + NLL +M + L+DG+L +EL F
Sbjct: 360 HAIIALSSLLQETELTPEQRLMVETILKSSNLLATLMNDVLDLSRLEDGSLQLELGTFNL 419
Query: 204 YKLFPDLFSL 233
+ LF ++ +L
Sbjct: 420 HTLFREVLNL 429
>sp|P08575|CD45_HUMAN Leukocyte common antigen precursor (L-CA) (CD45 antigen) (T200)
Length = 1304
Score = 30.0 bits (66), Expect = 7.0
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +3
Query: 60 EETGILLANDEFHKSILNNQNLLDDIMKNEWQRKVLKDGNLFIELFKSYKLFPDLFSLYE 239
E+ ++ +DE K ++N + + DI+ ++RK+ +G LF+ F+S P +FS +
Sbjct: 612 EQQELVERDDE--KQLMNVEPIHADILLETYKRKIADEGRLFLAEFQS---IPRVFSKFP 666
Query: 240 WSEWLTP 260
E P
Sbjct: 667 IKEARKP 673
>sp|Q9QYH1|MPP4_RAT MAGUK p55 subfamily member 4 (Discs, large homolog 6) (rDLG6)
Length = 441
Score = 29.6 bits (65), Expect = 9.1
Identities = 28/103 (27%), Positives = 42/103 (40%)
Frame = +3
Query: 420 QMSELFEMNILKSWRDVHTEAVKRQKCGGNDNVFFTIILSNGLLLALPGDSRYPSEFNVD 599
Q ++ + +L V ++RQ G N + F + A+P +R P + +D
Sbjct: 227 QPADKHRLIVLVGPSGVGVNELRRQLIGCNPSCFQS---------AVPHTTRSPKSYEMD 277
Query: 600 SVTMKYLSVEDISKDKYLRRTVFFDGEYVFHHNLNS*NCVFAV 728
Y+S E Y R + F GEY H S N V AV
Sbjct: 278 GREYHYVSRETFESLMYGHRMLEF-GEYKGHLYGTSVNAVLAV 319
>sp|O68429|TRPA_BUCDN Tryptophan synthase alpha chain
Length = 270
Score = 29.6 bits (65), Expect = 9.1
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -1
Query: 559 NASNNPFDRIIVKKTLSFPPHFCRFTASV*TSLHDFKIFISNNSDI*GVGIP 404
N N FDR+ +K F P S+ TSL I I N +D +GIP
Sbjct: 2 NRYENIFDRLSQRKEGCFVPFVVLGDPSLDTSLKIINILIQNGADALELGIP 53
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,022,554
Number of Sequences: 369166
Number of extensions: 1892957
Number of successful extensions: 4679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4674
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)