Planaria EST Database


DrC_01733

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01733
         (370 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8EVF5|OTCC_MYCPE  Ornithine carbamoyltransferase, catabo...    28   6.6  
sp|P31916|MAT2_EUGGR  Maturase-like protein 2                      28   8.6  
>sp|Q8EVF5|OTCC_MYCPE Ornithine carbamoyltransferase, catabolic (OTCase)
          Length = 342

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 346 NNIIYLH*NCLKNPFHNKNQT--K*TQFRSG*NMSGIAKSCITITETTFQFIHTNSISTA 173
           N++I+LH  CL   FH+ + +  K      G     +AK  + +T+  FQ +H  +   A
Sbjct: 269 NDVIFLH--CLP-AFHDDHTSFSKEVATTLGAKYPIVAKGEMEVTDEVFQSLHNKAFDQA 325

Query: 172 QNR 164
           +NR
Sbjct: 326 ENR 328
>sp|P31916|MAT2_EUGGR Maturase-like protein 2
          Length = 758

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
 Frame = +1

Query: 286 FDFYYEM------DFLDNFNVDI*CCLINIDIHV 369
           FDFY +       D L+NFN  + C L++ID+++
Sbjct: 521 FDFYNQKLSILLKDILENFNQFLSCSLVSIDLNL 554
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,134,763
Number of Sequences: 369166
Number of extensions: 662549
Number of successful extensions: 1515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)