Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_G01
(370 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8EVF5|OTCC_MYCPE Ornithine carbamoyltransferase, catabo... 28 6.6
sp|P31916|MAT2_EUGGR Maturase-like protein 2 28 8.6
>sp|Q8EVF5|OTCC_MYCPE Ornithine carbamoyltransferase, catabolic (OTCase)
Length = 342
Score = 28.1 bits (61), Expect = 6.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 346 NNIIYLH*NCLKNPFHNKNQT--K*TQFRSG*NMSGIAKSCITITETTFQFIHTNSISTA 173
N++I+LH CL FH+ + + K G +AK + +T+ FQ +H + A
Sbjct: 269 NDVIFLH--CLP-AFHDDHTSFSKEVATTLGAKYPIVAKGEMEVTDEVFQSLHNKAFDQA 325
Query: 172 QNR 164
+NR
Sbjct: 326 ENR 328
>sp|P31916|MAT2_EUGGR Maturase-like protein 2
Length = 758
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Frame = +1
Query: 286 FDFYYEM------DFLDNFNVDI*CCLINIDIHV 369
FDFY + D L+NFN + C L++ID+++
Sbjct: 521 FDFYNQKLSILLKDILENFNQFLSCSLVSIDLNL 554
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,134,763
Number of Sequences: 369166
Number of extensions: 662549
Number of successful extensions: 1515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)