Planaria EST Database


DrC_01723

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01723
         (716 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P6R9|CWC22_SCHPO  Pre-mRNA splicing factor cwc22 (Compl...   147   3e-35
sp|Q751P4|CWC22_ASHGO  Pre-mRNA splicing factor CWC22             117   3e-26
sp|P53333|CWC22_YEAST  Pre-mRNA splicing factor CWC22 (Compl...    79   9e-15
sp|Q9W4S7|MYC_DROME  Myc protein (dMyc1) (dMyc) (Diminutive ...    35   0.26 
sp|Q87VU3|SPEA_PSESM  Biosynthetic arginine decarboxylase (ADC)    32   1.3  
sp|Q603G2|FMT_METCA  Methionyl-tRNA formyltransferase              31   3.8  
sp|Q8CHI8|EP400_MOUSE  E1A binding protein p400 (p400 kDa SW...    31   3.8  
sp|Q96L91|EP400_HUMAN  E1A binding protein p400 (p400 kDa SW...    31   3.8  
sp|P27169|PON1_HUMAN  Serum paraoxonase/arylesterase 1 (PON ...    30   4.9  
sp|Q8WHW9|YCF2_PSINU  Protein ycf2                                 30   8.4  
>sp|Q9P6R9|CWC22_SCHPO Pre-mRNA splicing factor cwc22 (Complexed with cdc5 protein 22)
           (Cell cycle control protein cwf22)
          Length = 834

 Score =  147 bits (371), Expect = 3e-35
 Identities = 70/168 (41%), Positives = 108/168 (64%)
 Frame = +2

Query: 2   LPLAPNQLYEMASMILDCCAQLRIYEDKFGNLGQQMCLVNHKYVEEFEKLFCENYGGIHR 181
           + L   Q  E+ +M+++C +Q R Y   +G +G++ C ++  +   +E+ F   Y  IHR
Sbjct: 436 IDLPEGQEIELCNMVIECNSQERTYAKFYGLIGERFCKLSRTWRSTYEQCFKNYYETIHR 495

Query: 182 LDMGKIKNIAMFFAHLLCTDTISWGVMVVVKLTERDTTSSGRIFLKYLFQEMHTILGINE 361
            +  +++NIA+FFA+LL TD+I W V   V+LTE DTT+S RIFLK +FQE+   LG+  
Sbjct: 496 YETNRLRNIALFFANLLSTDSIGWEVYDCVRLTEDDTTASSRIFLKIMFQEIVEALGLKS 555

Query: 362 LCSRFQEPEMQVYYQNIFPRDDLKDTKFAINYFTAIELGKLTVEMRKY 505
           L  R  +P +  Y   +FP D+ ++ +F+INYFT+I LG LT EMR+Y
Sbjct: 556 LVERLHDPNLVPYLHGLFPVDEARNVRFSINYFTSIGLGALTEEMREY 603
>sp|Q751P4|CWC22_ASHGO Pre-mRNA splicing factor CWC22
          Length = 554

 Score =  117 bits (293), Expect = 3e-26
 Identities = 59/161 (36%), Positives = 92/161 (57%)
 Frame = +2

Query: 17  NQLYEMASMILDCCAQLRIYEDKFGNLGQQMCLVNHKYVEEFEKLFCENYGGIHRLDMGK 196
           +Q   +  +++  CAQ + Y   +G L +++C  +  +   F  LF + YG +H  +  +
Sbjct: 310 SQKATIVEIVVKACAQEQTYTKFYGILAERLCGSHRNWPTSFTNLFRDLYGTLHEFEPNQ 369

Query: 197 IKNIAMFFAHLLCTDTISWGVMVVVKLTERDTTSSGRIFLKYLFQEMHTILGINELCSRF 376
           ++N+  F+ H+L  D I   +   V L+E  TT S R+FLK++FQE+   LGI E+  R 
Sbjct: 370 LRNMGKFWGHMLAADHIGLNLFECVHLSEHRTTPSSRVFLKFIFQELVADLGIAEVRKRL 429

Query: 377 QEPEMQVYYQNIFPRDDLKDTKFAINYFTAIELGKLTVEMR 499
           ++   Q   Q +FP++   DT FAINYFTAI LG LT  MR
Sbjct: 430 EDENAQPLVQGLFPKEGNADTVFAINYFTAIGLGVLTESMR 470
>sp|P53333|CWC22_YEAST Pre-mRNA splicing factor CWC22 (Complexed with CEF1 protein 22)
          Length = 577

 Score = 79.3 bits (194), Expect = 9e-15
 Identities = 47/168 (27%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
 Frame = +2

Query: 2   LPLAPNQLYEMASMILDCCAQLRIYEDKFGNLGQQMCLVNHKYVEEFEKLFCENYG-GIH 178
           L +A N    +  +I+    Q   +   +  L ++M   +  +   + + F +NY   I 
Sbjct: 315 LKIANNLKKSVVDIIIKSSLQESTFSKFYSILSERMITFHRSWQTAYNETFEQNYTQDIE 374

Query: 179 RLDMGKIKNIAMFFAHLLCTDTISWGVMVVVKLTERDTTSSGRIFLKYLFQEMHTILGIN 358
             +  +++ +  F+ HL+  + +    + ++KLTE ++   GRIF+K+LFQE+   LG++
Sbjct: 375 DYETDQLRILGKFWGHLISYEFLPMDCLKIIKLTEEESCPQGRIFIKFLFQELVNELGLD 434

Query: 359 ELCSRFQEPEMQVYYQNIFPRD-DLKDTKFAINYFTAIELGKLTVEMR 499
           EL  R    ++      +FP + D +  +++IN+FTAI LG LT +MR
Sbjct: 435 ELQLRLNSSKL----DGMFPLEGDAEHIRYSINFFTAIGLGLLTEDMR 478
>sp|Q9W4S7|MYC_DROME Myc protein (dMyc1) (dMyc) (Diminutive protein)
          Length = 717

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = -1

Query: 506 NISSSPQLISPTRSL*NN*SQILCPSNRPSERCSDSRPAFPAPGISSTTR*SRESCASPG 327
           N+  +P   SP +S+ N  S+   PS+ P + CS + P++    + S+   S  S +S  
Sbjct: 458 NLPYTPASSSPVKSVAN--SRYPSPSSTPYQNCSSASPSYSPLSVDSSNVSSSSSSSSSQ 515

Query: 326 TNISEKSS---RKRSYL 285
           ++ +  SS   RKRS L
Sbjct: 516 SSFTTSSSNKGRKRSSL 532
>sp|Q87VU3|SPEA_PSESM Biosynthetic arginine decarboxylase (ADC)
          Length = 637

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
 Frame = +2

Query: 308 IFLKYLFQE----MHTILGINELCSRFQEPEMQVYYQNIFPRDDLKD---------TKFA 448
           IFL   +QE    MH + G  +  + +Q P+  VY+  I   D ++D          +  
Sbjct: 542 IFLVGAYQEILGDMHNLFGDTDSVNIYQNPDGSVYHAGIETHDTIEDMLRYVHLSPEELM 601

Query: 449 INYFTAIELGKLTVEMRKYFEEAKKM 526
            +Y   +   K+T   R YF +A ++
Sbjct: 602 THYRDKVASAKITpreRTYFLDALRL 627
>sp|Q603G2|FMT_METCA Methionyl-tRNA formyltransferase
          Length = 308

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 325 QIFQKNPPGRGRISLGEFHNDHNSPGNRIGT 233
           +I +  PPG+ R+S  +F N H   G R+GT
Sbjct: 278 RILEVQPPGKRRMSAKDFLNAHALAGKRLGT 308
>sp|Q8CHI8|EP400_MOUSE E1A binding protein p400 (p400 kDa SWI2/SNF2-related protein) (Domino
            homolog) (mDomino)
          Length = 3072

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 146  KLFCENYGGI--HRLDMGKIKNIAMFFAHLLCTDTISWGVMVVV 271
            KL+ +N  GI      +GK   I  FFAHL C +  +WG  +VV
Sbjct: 1103 KLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEG-NWGPHLVV 1145
>sp|Q96L91|EP400_HUMAN E1A binding protein p400 (p400 kDa SWI2/SNF2-related protein) (Domino
            homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide
            repeat-containing gene 12 protein)
          Length = 3160

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 146  KLFCENYGGI--HRLDMGKIKNIAMFFAHLLCTDTISWGVMVVV 271
            KL+ +N  GI      +GK   I  FFAHL C +  +WG  +VV
Sbjct: 1104 KLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEG-NWGPHLVV 1146
>sp|P27169|PON1_HUMAN Serum paraoxonase/arylesterase 1 (PON 1) (Serum
           aryldialkylphosphatase 1) (A-esterase 1) (Aromatic
           esterase 1) (K-45)
          Length = 355

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = +2

Query: 296 SSGRIFLKYLFQEMHTILGINELCSRFQEPEMQVYYQNIFPRDDLKDTKFAINYFTAIEL 475
           S G+I L  L +E  T+L +    S+F       +  + F  +D       +N+  A   
Sbjct: 81  SPGKILLMDLNEEDPTVLELGITGSKFDVSSFNPHGISTFTDEDNAMYLLVVNHPDA--- 137

Query: 476 GKLTVEMRKYFEEAKKMKAAKTI 544
            K TVE+ K+ EE K +   KTI
Sbjct: 138 -KSTVELFKFQEEEKSLLHLKTI 159
>sp|Q8WHW9|YCF2_PSINU Protein ycf2
          Length = 2313

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 589  AFSLFSRFLLFTIFLNSFRRFHFFRFLKIFP 497
            +FSL+ RF +F  FL+ F + +  + L  FP
Sbjct: 1416 SFSLWKRFEVFNYFLDPFNKIYIEKVLSFFP 1446
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,869,798
Number of Sequences: 369166
Number of extensions: 1742527
Number of successful extensions: 5132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5129
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)