Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_D14
(716 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9P6R9|CWC22_SCHPO Pre-mRNA splicing factor cwc22 (Compl... 147 3e-35
sp|Q751P4|CWC22_ASHGO Pre-mRNA splicing factor CWC22 117 3e-26
sp|P53333|CWC22_YEAST Pre-mRNA splicing factor CWC22 (Compl... 79 9e-15
sp|Q9W4S7|MYC_DROME Myc protein (dMyc1) (dMyc) (Diminutive ... 35 0.26
sp|Q87VU3|SPEA_PSESM Biosynthetic arginine decarboxylase (ADC) 32 1.3
sp|Q603G2|FMT_METCA Methionyl-tRNA formyltransferase 31 3.8
sp|Q8CHI8|EP400_MOUSE E1A binding protein p400 (p400 kDa SW... 31 3.8
sp|Q96L91|EP400_HUMAN E1A binding protein p400 (p400 kDa SW... 31 3.8
sp|P27169|PON1_HUMAN Serum paraoxonase/arylesterase 1 (PON ... 30 4.9
sp|Q8WHW9|YCF2_PSINU Protein ycf2 30 8.4
>sp|Q9P6R9|CWC22_SCHPO Pre-mRNA splicing factor cwc22 (Complexed with cdc5 protein 22)
(Cell cycle control protein cwf22)
Length = 834
Score = 147 bits (371), Expect = 3e-35
Identities = 70/168 (41%), Positives = 108/168 (64%)
Frame = +2
Query: 2 LPLAPNQLYEMASMILDCCAQLRIYEDKFGNLGQQMCLVNHKYVEEFEKLFCENYGGIHR 181
+ L Q E+ +M+++C +Q R Y +G +G++ C ++ + +E+ F Y IHR
Sbjct: 436 IDLPEGQEIELCNMVIECNSQERTYAKFYGLIGERFCKLSRTWRSTYEQCFKNYYETIHR 495
Query: 182 LDMGKIKNIAMFFAHLLCTDTISWGVMVVVKLTERDTTSSGRIFLKYLFQEMHTILGINE 361
+ +++NIA+FFA+LL TD+I W V V+LTE DTT+S RIFLK +FQE+ LG+
Sbjct: 496 YETNRLRNIALFFANLLSTDSIGWEVYDCVRLTEDDTTASSRIFLKIMFQEIVEALGLKS 555
Query: 362 LCSRFQEPEMQVYYQNIFPRDDLKDTKFAINYFTAIELGKLTVEMRKY 505
L R +P + Y +FP D+ ++ +F+INYFT+I LG LT EMR+Y
Sbjct: 556 LVERLHDPNLVPYLHGLFPVDEARNVRFSINYFTSIGLGALTEEMREY 603
>sp|Q751P4|CWC22_ASHGO Pre-mRNA splicing factor CWC22
Length = 554
Score = 117 bits (293), Expect = 3e-26
Identities = 59/161 (36%), Positives = 92/161 (57%)
Frame = +2
Query: 17 NQLYEMASMILDCCAQLRIYEDKFGNLGQQMCLVNHKYVEEFEKLFCENYGGIHRLDMGK 196
+Q + +++ CAQ + Y +G L +++C + + F LF + YG +H + +
Sbjct: 310 SQKATIVEIVVKACAQEQTYTKFYGILAERLCGSHRNWPTSFTNLFRDLYGTLHEFEPNQ 369
Query: 197 IKNIAMFFAHLLCTDTISWGVMVVVKLTERDTTSSGRIFLKYLFQEMHTILGINELCSRF 376
++N+ F+ H+L D I + V L+E TT S R+FLK++FQE+ LGI E+ R
Sbjct: 370 LRNMGKFWGHMLAADHIGLNLFECVHLSEHRTTPSSRVFLKFIFQELVADLGIAEVRKRL 429
Query: 377 QEPEMQVYYQNIFPRDDLKDTKFAINYFTAIELGKLTVEMR 499
++ Q Q +FP++ DT FAINYFTAI LG LT MR
Sbjct: 430 EDENAQPLVQGLFPKEGNADTVFAINYFTAIGLGVLTESMR 470
>sp|P53333|CWC22_YEAST Pre-mRNA splicing factor CWC22 (Complexed with CEF1 protein 22)
Length = 577
Score = 79.3 bits (194), Expect = 9e-15
Identities = 47/168 (27%), Positives = 89/168 (52%), Gaps = 2/168 (1%)
Frame = +2
Query: 2 LPLAPNQLYEMASMILDCCAQLRIYEDKFGNLGQQMCLVNHKYVEEFEKLFCENYG-GIH 178
L +A N + +I+ Q + + L ++M + + + + F +NY I
Sbjct: 315 LKIANNLKKSVVDIIIKSSLQESTFSKFYSILSERMITFHRSWQTAYNETFEQNYTQDIE 374
Query: 179 RLDMGKIKNIAMFFAHLLCTDTISWGVMVVVKLTERDTTSSGRIFLKYLFQEMHTILGIN 358
+ +++ + F+ HL+ + + + ++KLTE ++ GRIF+K+LFQE+ LG++
Sbjct: 375 DYETDQLRILGKFWGHLISYEFLPMDCLKIIKLTEEESCPQGRIFIKFLFQELVNELGLD 434
Query: 359 ELCSRFQEPEMQVYYQNIFPRD-DLKDTKFAINYFTAIELGKLTVEMR 499
EL R ++ +FP + D + +++IN+FTAI LG LT +MR
Sbjct: 435 ELQLRLNSSKL----DGMFPLEGDAEHIRYSINFFTAIGLGLLTEDMR 478
>sp|Q9W4S7|MYC_DROME Myc protein (dMyc1) (dMyc) (Diminutive protein)
Length = 717
Score = 34.7 bits (78), Expect = 0.26
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = -1
Query: 506 NISSSPQLISPTRSL*NN*SQILCPSNRPSERCSDSRPAFPAPGISSTTR*SRESCASPG 327
N+ +P SP +S+ N S+ PS+ P + CS + P++ + S+ S S +S
Sbjct: 458 NLPYTPASSSPVKSVAN--SRYPSPSSTPYQNCSSASPSYSPLSVDSSNVSSSSSSSSSQ 515
Query: 326 TNISEKSS---RKRSYL 285
++ + SS RKRS L
Sbjct: 516 SSFTTSSSNKGRKRSSL 532
>sp|Q87VU3|SPEA_PSESM Biosynthetic arginine decarboxylase (ADC)
Length = 637
Score = 32.3 bits (72), Expect = 1.3
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Frame = +2
Query: 308 IFLKYLFQE----MHTILGINELCSRFQEPEMQVYYQNIFPRDDLKD---------TKFA 448
IFL +QE MH + G + + +Q P+ VY+ I D ++D +
Sbjct: 542 IFLVGAYQEILGDMHNLFGDTDSVNIYQNPDGSVYHAGIETHDTIEDMLRYVHLSPEELM 601
Query: 449 INYFTAIELGKLTVEMRKYFEEAKKM 526
+Y + K+T R YF +A ++
Sbjct: 602 THYRDKVASAKITpreRTYFLDALRL 627
>sp|Q603G2|FMT_METCA Methionyl-tRNA formyltransferase
Length = 308
Score = 30.8 bits (68), Expect = 3.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 325 QIFQKNPPGRGRISLGEFHNDHNSPGNRIGT 233
+I + PPG+ R+S +F N H G R+GT
Sbjct: 278 RILEVQPPGKRRMSAKDFLNAHALAGKRLGT 308
>sp|Q8CHI8|EP400_MOUSE E1A binding protein p400 (p400 kDa SWI2/SNF2-related protein) (Domino
homolog) (mDomino)
Length = 3072
Score = 30.8 bits (68), Expect = 3.8
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 146 KLFCENYGGI--HRLDMGKIKNIAMFFAHLLCTDTISWGVMVVV 271
KL+ +N GI +GK I FFAHL C + +WG +VV
Sbjct: 1103 KLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEG-NWGPHLVV 1145
>sp|Q96L91|EP400_HUMAN E1A binding protein p400 (p400 kDa SWI2/SNF2-related protein) (Domino
homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide
repeat-containing gene 12 protein)
Length = 3160
Score = 30.8 bits (68), Expect = 3.8
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 146 KLFCENYGGI--HRLDMGKIKNIAMFFAHLLCTDTISWGVMVVV 271
KL+ +N GI +GK I FFAHL C + +WG +VV
Sbjct: 1104 KLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEG-NWGPHLVV 1146
>sp|P27169|PON1_HUMAN Serum paraoxonase/arylesterase 1 (PON 1) (Serum
aryldialkylphosphatase 1) (A-esterase 1) (Aromatic
esterase 1) (K-45)
Length = 355
Score = 30.4 bits (67), Expect = 4.9
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +2
Query: 296 SSGRIFLKYLFQEMHTILGINELCSRFQEPEMQVYYQNIFPRDDLKDTKFAINYFTAIEL 475
S G+I L L +E T+L + S+F + + F +D +N+ A
Sbjct: 81 SPGKILLMDLNEEDPTVLELGITGSKFDVSSFNPHGISTFTDEDNAMYLLVVNHPDA--- 137
Query: 476 GKLTVEMRKYFEEAKKMKAAKTI 544
K TVE+ K+ EE K + KTI
Sbjct: 138 -KSTVELFKFQEEEKSLLHLKTI 159
>sp|Q8WHW9|YCF2_PSINU Protein ycf2
Length = 2313
Score = 29.6 bits (65), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 589 AFSLFSRFLLFTIFLNSFRRFHFFRFLKIFP 497
+FSL+ RF +F FL+ F + + + L FP
Sbjct: 1416 SFSLWKRFEVFNYFLDPFNKIYIEKVLSFFP 1446
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,869,798
Number of Sequences: 369166
Number of extensions: 1742527
Number of successful extensions: 5132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5129
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)