Planaria EST Database


DrC_01720

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01720
         (142 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P30599|CHS2_USTMA  Chitin synthase 2 (Chitin-UDP acetyl-g...    30   1.3  
sp|Q8BKX1|BAIP2_MOUSE  Brain-specific angiogenesis inhibitor...    29   3.8  
sp|Q6GMN2|BAIP2_RAT  Brain-specific angiogenesis inhibitor 1...    29   3.8  
sp|Q92YY3|Y5C9_RHIME  Hypothetical UPF0261 protein RA0729          28   5.0  
sp|Q17426|YQ4B_CAEEL  Hypothetical pseudouridine synthase in...    28   8.4  
sp|Q9TIS6|MATK_CASLN  Maturase K (Intron maturase)                 28   8.4  
>sp|P30599|CHS2_USTMA Chitin synthase 2 (Chitin-UDP acetyl-glucosaminyl transferase 2)
          Length = 1074

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = -3

Query: 116 FAIATSVLTFSFFLSVL-----DDRVGGVGASSVFLFRNIFI 6
           F IA   L F F LS        D  GG GA+ V +F+NIFI
Sbjct: 750 FGIANFFLAFYFLLSASTSTEGSDPFGGQGAAIVEIFQNIFI 791
>sp|Q8BKX1|BAIP2_MOUSE Brain-specific angiogenesis inhibitor 1-associated protein 2
           (BAI1-associated protein 2) (BAI-associated protein 2)
           (Insulin receptor substrate p53) (IRSp53) (Insulin
           receptor substrate protein of 53 kDa) (Insulin receptor
           tyrosine kinase 53 kDa substrate)
          Length = 535

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 4   IMKMFLNKNTELAPTPPTRSSSTLKKKEKVSTDVAIAKPLPLPPK 138
           +M+   N N  + P+  + S S L     +S  +  AKPLP+PP+
Sbjct: 243 LMQQMANSNGSILPSALSASKSNLV----ISDPIPGAKPLPVPPE 283
>sp|Q6GMN2|BAIP2_RAT Brain-specific angiogenesis inhibitor 1-associated protein 2
           (BAI1-associated protein 2) (BAI-associated protein 2)
           (Insulin receptor substrate p53) (IRSp53) (Insulin
           receptor substrate protein of 53 kDa) (Insulin receptor
           tyrosine kinase substrate protein p53)
          Length = 535

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 4   IMKMFLNKNTELAPTPPTRSSSTLKKKEKVSTDVAIAKPLPLPPK 138
           +M+   N N  + P+  + S S L     +S  +  AKPLP+PP+
Sbjct: 243 LMQQMANSNGSILPSALSASKSNLV----ISDPIPGAKPLPVPPE 283
>sp|Q92YY3|Y5C9_RHIME Hypothetical UPF0261 protein RA0729
          Length = 398

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = -3

Query: 137 LGGNGRGFAIATSVLTFSFFLSVLDDRVGGVG 42
           L GN RG AIA     F+ FL   DD  G VG
Sbjct: 64  LSGNDRGTAIAAMGEAFARFLPARDDVAGVVG 95
>sp|Q17426|YQ4B_CAEEL Hypothetical pseudouridine synthase in chromosome V
          Length = 577

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 1   FIMKMFLNKNTELA-PTPPTRSSSTLKKKEKVSTDVAIAKP 120
           FI++  L  +T LA P+P     ST  KKE +  +  +AKP
Sbjct: 30  FIVQEILADHTVLAIPSPDVVLESTGSKKEDIEIEECVAKP 70
>sp|Q9TIS6|MATK_CASLN Maturase K (Intron maturase)
          Length = 509

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 4   IMKMFLNKNTELAPTPPTRSSSTLKKKEKV 93
           +++ FLNKN     TP   SSS LK+ +++
Sbjct: 177 LLRFFLNKNWNSLITPKKASSSFLKRNQRL 206
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.309    0.125    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,254,074
Number of Sequences: 369166
Number of extensions: 164183
Number of successful extensions: 532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 68,354,980
effective HSP length: 20
effective length of database: 64,660,280
effective search space used: 1681167280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)