Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_C14
(142 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30599|CHS2_USTMA Chitin synthase 2 (Chitin-UDP acetyl-g... 30 1.3
sp|Q8BKX1|BAIP2_MOUSE Brain-specific angiogenesis inhibitor... 29 3.8
sp|Q6GMN2|BAIP2_RAT Brain-specific angiogenesis inhibitor 1... 29 3.8
sp|Q92YY3|Y5C9_RHIME Hypothetical UPF0261 protein RA0729 28 5.0
sp|Q17426|YQ4B_CAEEL Hypothetical pseudouridine synthase in... 28 8.4
sp|Q9TIS6|MATK_CASLN Maturase K (Intron maturase) 28 8.4
>sp|P30599|CHS2_USTMA Chitin synthase 2 (Chitin-UDP acetyl-glucosaminyl transferase 2)
Length = 1074
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = -3
Query: 116 FAIATSVLTFSFFLSVL-----DDRVGGVGASSVFLFRNIFI 6
F IA L F F LS D GG GA+ V +F+NIFI
Sbjct: 750 FGIANFFLAFYFLLSASTSTEGSDPFGGQGAAIVEIFQNIFI 791
>sp|Q8BKX1|BAIP2_MOUSE Brain-specific angiogenesis inhibitor 1-associated protein 2
(BAI1-associated protein 2) (BAI-associated protein 2)
(Insulin receptor substrate p53) (IRSp53) (Insulin
receptor substrate protein of 53 kDa) (Insulin receptor
tyrosine kinase 53 kDa substrate)
Length = 535
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 4 IMKMFLNKNTELAPTPPTRSSSTLKKKEKVSTDVAIAKPLPLPPK 138
+M+ N N + P+ + S S L +S + AKPLP+PP+
Sbjct: 243 LMQQMANSNGSILPSALSASKSNLV----ISDPIPGAKPLPVPPE 283
>sp|Q6GMN2|BAIP2_RAT Brain-specific angiogenesis inhibitor 1-associated protein 2
(BAI1-associated protein 2) (BAI-associated protein 2)
(Insulin receptor substrate p53) (IRSp53) (Insulin
receptor substrate protein of 53 kDa) (Insulin receptor
tyrosine kinase substrate protein p53)
Length = 535
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 4 IMKMFLNKNTELAPTPPTRSSSTLKKKEKVSTDVAIAKPLPLPPK 138
+M+ N N + P+ + S S L +S + AKPLP+PP+
Sbjct: 243 LMQQMANSNGSILPSALSASKSNLV----ISDPIPGAKPLPVPPE 283
>sp|Q92YY3|Y5C9_RHIME Hypothetical UPF0261 protein RA0729
Length = 398
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -3
Query: 137 LGGNGRGFAIATSVLTFSFFLSVLDDRVGGVG 42
L GN RG AIA F+ FL DD G VG
Sbjct: 64 LSGNDRGTAIAAMGEAFARFLPARDDVAGVVG 95
>sp|Q17426|YQ4B_CAEEL Hypothetical pseudouridine synthase in chromosome V
Length = 577
Score = 27.7 bits (60), Expect = 8.4
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 1 FIMKMFLNKNTELA-PTPPTRSSSTLKKKEKVSTDVAIAKP 120
FI++ L +T LA P+P ST KKE + + +AKP
Sbjct: 30 FIVQEILADHTVLAIPSPDVVLESTGSKKEDIEIEECVAKP 70
>sp|Q9TIS6|MATK_CASLN Maturase K (Intron maturase)
Length = 509
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 4 IMKMFLNKNTELAPTPPTRSSSTLKKKEKV 93
+++ FLNKN TP SSS LK+ +++
Sbjct: 177 LLRFFLNKNWNSLITPKKASSSFLKRNQRL 206
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.309 0.125 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,254,074
Number of Sequences: 369166
Number of extensions: 164183
Number of successful extensions: 532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 68,354,980
effective HSP length: 20
effective length of database: 64,660,280
effective search space used: 1681167280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)