Planaria EST Database


DrC_01719

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01719
         (625 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54677|PI4K_DICDI  Phosphatidylinositol 4-kinase (PI4-kin...    33   0.59 
sp|Q8NVZ9|METK_STAAW  S-adenosylmethionine synthetase (Methi...    30   5.0  
sp|P50307|METK_STAAU  S-adenosylmethionine synthetase (Methi...    30   5.0  
sp|P26192|VP3_ROTPC  Inner core protein VP3                        29   8.5  
sp|Q8RGH4|HTPG_FUSNN  Chaperone protein htpG (Heat shock pro...    29   8.5  
>sp|P54677|PI4K_DICDI Phosphatidylinositol 4-kinase (PI4-kinase) (PtdIns-4-kinase)
           (PI4K-alpha)
          Length = 1093

 Score = 33.1 bits (74), Expect = 0.59
 Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
 Frame = +3

Query: 129 NDKH-QNEASTDLNNSDEITFEDVGCANNEIIVAINQRCYSESDKGHRISPGRKFDTINN 305
           ND H +N+   D+N+++          NN I    N    ++ +  + I P    D   N
Sbjct: 171 NDHHIENDPKKDINSNNN--------NNNNIN---NNNSNNDDNNNNEILPNENSDNSIN 219

Query: 306 DIENKKVEFKKEVDINNESNKVNIDVVSSSFNETSTISDSSLLVDD 443
           D  N+        +I+ E+N + ID+ S + ++++  + +S L ++
Sbjct: 220 DENNQYGNSNNNNNISGENNNIKIDINSQNKSDSNIETLNSTLCEE 265
>sp|Q8NVZ9|METK_STAAW S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase) (MAT)
 sp|Q6G8E3|METK_STAAS S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase) (MAT)
 sp|Q5HEY9|METK_STAAC S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase) (MAT)
          Length = 397

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 25/106 (23%), Positives = 44/106 (41%)
 Frame = +3

Query: 198 GCANNEIIVAINQRCYSESDKGHRISPGRKFDTINNDIENKKVEFKKEVDINNESNKVNI 377
           G A NE    +    Y       R+S  RK  T+N    + KV+   E D N+   +++ 
Sbjct: 137 GYATNETETYMPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDNPVRIDT 196

Query: 378 DVVSSSFNETSTISDSSLLVDDHFKISI*EVPFALHLLNDEFSAYV 515
            VVS+   E  T+      + +  K  +       +L+N++   Y+
Sbjct: 197 IVVSTQHAEDVTLEQ----IQEDIKAHVIYPTVPENLINEQTKFYI 238
>sp|P50307|METK_STAAU S-adenosylmethionine synthetase (Methionine adenosyltransferase)
           (AdoMet synthetase) (MAT)
          Length = 397

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 25/106 (23%), Positives = 44/106 (41%)
 Frame = +3

Query: 198 GCANNEIIVAINQRCYSESDKGHRISPGRKFDTINNDIENKKVEFKKEVDINNESNKVNI 377
           G A NE    +    Y       R+S  RK  T+N    + KV+   E D N+   +++ 
Sbjct: 137 GYATNETETYMPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDNPVRIDT 196

Query: 378 DVVSSSFNETSTISDSSLLVDDHFKISI*EVPFALHLLNDEFSAYV 515
            VVS+   E  T+      + +  K  +       +L+N++   Y+
Sbjct: 197 IVVSTQHAEDVTLEQ----IQEDIKAHVIYPTVPENLINEQTKFYI 238
>sp|P26192|VP3_ROTPC Inner core protein VP3
          Length = 692

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -1

Query: 619 IAIYCNN*MI*DYY*EIS*FYKYTYYKSNEYI 524
           I I+ ++    D+  +I  F++YTYYK+NE+I
Sbjct: 78  IGIFTSSNFTYDWQHKIVYFHEYTYYKNNEFI 109
>sp|Q8RGH4|HTPG_FUSNN Chaperone protein htpG (Heat shock protein htpG) (High temperature
           protein G)
          Length = 607

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 300 NNDIENKKVEFKKEVDINNESNKVNIDVVSSSFNETSTISDSSL 431
           N+ I+  K +   + DI  +++K  ID+     N T TISD+ +
Sbjct: 39  NDAIDKLKFQSLTDTDILKDNDKFRIDISVDKDNRTLTISDNGI 82
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,928,636
Number of Sequences: 369166
Number of extensions: 1015836
Number of successful extensions: 2875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2872
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)