Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_C13
(625 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54677|PI4K_DICDI Phosphatidylinositol 4-kinase (PI4-kin... 33 0.59
sp|Q8NVZ9|METK_STAAW S-adenosylmethionine synthetase (Methi... 30 5.0
sp|P50307|METK_STAAU S-adenosylmethionine synthetase (Methi... 30 5.0
sp|P26192|VP3_ROTPC Inner core protein VP3 29 8.5
sp|Q8RGH4|HTPG_FUSNN Chaperone protein htpG (Heat shock pro... 29 8.5
>sp|P54677|PI4K_DICDI Phosphatidylinositol 4-kinase (PI4-kinase) (PtdIns-4-kinase)
(PI4K-alpha)
Length = 1093
Score = 33.1 bits (74), Expect = 0.59
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +3
Query: 129 NDKH-QNEASTDLNNSDEITFEDVGCANNEIIVAINQRCYSESDKGHRISPGRKFDTINN 305
ND H +N+ D+N+++ NN I N ++ + + I P D N
Sbjct: 171 NDHHIENDPKKDINSNNN--------NNNNIN---NNNSNNDDNNNNEILPNENSDNSIN 219
Query: 306 DIENKKVEFKKEVDINNESNKVNIDVVSSSFNETSTISDSSLLVDD 443
D N+ +I+ E+N + ID+ S + ++++ + +S L ++
Sbjct: 220 DENNQYGNSNNNNNISGENNNIKIDINSQNKSDSNIETLNSTLCEE 265
>sp|Q8NVZ9|METK_STAAW S-adenosylmethionine synthetase (Methionine adenosyltransferase)
(AdoMet synthetase) (MAT)
sp|Q6G8E3|METK_STAAS S-adenosylmethionine synthetase (Methionine adenosyltransferase)
(AdoMet synthetase) (MAT)
sp|Q5HEY9|METK_STAAC S-adenosylmethionine synthetase (Methionine adenosyltransferase)
(AdoMet synthetase) (MAT)
Length = 397
Score = 30.0 bits (66), Expect = 5.0
Identities = 25/106 (23%), Positives = 44/106 (41%)
Frame = +3
Query: 198 GCANNEIIVAINQRCYSESDKGHRISPGRKFDTINNDIENKKVEFKKEVDINNESNKVNI 377
G A NE + Y R+S RK T+N + KV+ E D N+ +++
Sbjct: 137 GYATNETETYMPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDNPVRIDT 196
Query: 378 DVVSSSFNETSTISDSSLLVDDHFKISI*EVPFALHLLNDEFSAYV 515
VVS+ E T+ + + K + +L+N++ Y+
Sbjct: 197 IVVSTQHAEDVTLEQ----IQEDIKAHVIYPTVPENLINEQTKFYI 238
>sp|P50307|METK_STAAU S-adenosylmethionine synthetase (Methionine adenosyltransferase)
(AdoMet synthetase) (MAT)
Length = 397
Score = 30.0 bits (66), Expect = 5.0
Identities = 25/106 (23%), Positives = 44/106 (41%)
Frame = +3
Query: 198 GCANNEIIVAINQRCYSESDKGHRISPGRKFDTINNDIENKKVEFKKEVDINNESNKVNI 377
G A NE + Y R+S RK T+N + KV+ E D N+ +++
Sbjct: 137 GYATNETETYMPLAIYLSHQLAKRLSDVRKDGTLNYLRPDGKVQVTVEYDENDNPVRIDT 196
Query: 378 DVVSSSFNETSTISDSSLLVDDHFKISI*EVPFALHLLNDEFSAYV 515
VVS+ E T+ + + K + +L+N++ Y+
Sbjct: 197 IVVSTQHAEDVTLEQ----IQEDIKAHVIYPTVPENLINEQTKFYI 238
>sp|P26192|VP3_ROTPC Inner core protein VP3
Length = 692
Score = 29.3 bits (64), Expect = 8.5
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 619 IAIYCNN*MI*DYY*EIS*FYKYTYYKSNEYI 524
I I+ ++ D+ +I F++YTYYK+NE+I
Sbjct: 78 IGIFTSSNFTYDWQHKIVYFHEYTYYKNNEFI 109
>sp|Q8RGH4|HTPG_FUSNN Chaperone protein htpG (Heat shock protein htpG) (High temperature
protein G)
Length = 607
Score = 29.3 bits (64), Expect = 8.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 300 NNDIENKKVEFKKEVDINNESNKVNIDVVSSSFNETSTISDSSL 431
N+ I+ K + + DI +++K ID+ N T TISD+ +
Sbjct: 39 NDAIDKLKFQSLTDTDILKDNDKFRIDISVDKDNRTLTISDNGI 82
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,928,636
Number of Sequences: 369166
Number of extensions: 1015836
Number of successful extensions: 2875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2872
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)