Planaria EST Database


DrC_01717

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01717
         (891 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VCP0|ELOA1_DROME  Probable transcription elongation fac...    43   0.001
sp|Q8NG57|ELOA3_HUMAN  RNA polymerase II transcription facto...    41   0.005
sp|Q63187|ELOA1_RAT  Transcription elongation factor B polyp...    39   0.019
sp|Q8CB77|ELOA1_MOUSE  Transcription elongation factor B pol...    39   0.019
sp|Q14241|ELOA1_HUMAN  Transcription elongation factor B pol...    37   0.097
sp|Q96N68|CR015_HUMAN  Hypothetical protein C18orf15               34   0.48 
sp|Q8IYF1|ELOA2_HUMAN  RNA polymerase II transcription facto...    33   0.82 
sp|Q9Z1S5|SEPT3_MOUSE  Neuronal-specific septin-3                  32   2.4  
sp|Q6PFR5|TRA2A_MOUSE  Transformer-2 protein homolog (TRA-2 ...    32   2.4  
sp|Q8NG92|O13H1_HUMAN  Olfactory receptor 13H1                     31   5.3  
>sp|Q9VCP0|ELOA1_DROME Probable transcription elongation factor B polypeptide 3 (RNA
           polymerase II transcription factor SIII subunit A)
           (Elongin A)
          Length = 643

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 22/98 (22%), Positives = 51/98 (52%)
 Frame = +3

Query: 3   VLETEIAQYNYEKLKAFDGDSKKIQRKTECFWEKLFKKNHKSANKRDGETWREAYIRNQS 182
           VL   + +   ++L  F+  +  +   ++  W++  +++ +S  + + ETWRE ++R Q 
Sbjct: 465 VLRPVLERATPQQLLNFEEYNPYLMDDSDVLWQQHVQRHCRSQRREEMETWREMFLRCQE 524

Query: 183 AQDYRLKEISERLKKNTVESLNAIPKAKLLTNSNLAKP 296
            +D +L  ++E +K +   S   + K +L    ++ KP
Sbjct: 525 EKDRKLSILAESIKASQKISEAPVRKTQLAFVDSMVKP 562
>sp|Q8NG57|ELOA3_HUMAN RNA polymerase II transcription factor SIII subunit A3 (Elongin A3)
           (EloA3) (Transcription elongation factor B polypeptide
           3C)
          Length = 546

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 22/97 (22%), Positives = 55/97 (56%)
 Frame = +3

Query: 3   VLETEIAQYNYEKLKAFDGDSKKIQRKTECFWEKLFKKNHKSANKRDGETWREAYIRNQS 182
           VLE  +  +  ++L   + D+  + R+T+  W     ++ K    ++ E+WRE Y+R + 
Sbjct: 362 VLEPVLEGWTPDQLYRTEKDNAALARETDELWRIHCLQDFKEEKPQEHESWRELYLRLRD 421

Query: 183 AQDYRLKEISERLKKNTVESLNAIPKAKLLTNSNLAK 293
           A++ RL+ ++ ++ ++  E+  +  + K++  +++AK
Sbjct: 422 AREQRLRVVTTKI-RSARENKPSGRQTKMICFNSVAK 457
>sp|Q63187|ELOA1_RAT Transcription elongation factor B polypeptide 3 (RNA polymerase II
           transcription factor SIII subunit A) (SIII p110)
           (Elongin A) (EloA) (Elongin 110 kDa subunit)
          Length = 773

 Score = 38.9 bits (89), Expect = 0.019
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
 Frame = +3

Query: 3   VLETEIAQYNYEKLKAFDGDSKKIQRKTECFWEKLFKKNHKSANKRDGETWREAYIRNQS 182
           VLE  + +   ++L   +  +  +  +T+  W+    ++ K     + E+WRE Y+R Q 
Sbjct: 575 VLEPVLERCTPDQLYRIEECNHVLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQD 634

Query: 183 AQDYRLKEISERLKKNTVESLNA-IPK---AKLLTNSNLAKP 296
           A++ RL     RL  N + S +A  PK   AK+   +++AKP
Sbjct: 635 AREQRL-----RLLTNNIRSAHANKPKGRQAKMAFVNSVAKP 671
>sp|Q8CB77|ELOA1_MOUSE Transcription elongation factor B polypeptide 3 (RNA polymerase II
           transcription factor SIII subunit A) (SIII p110)
           (Elongin A) (EloA) (Elongin 110 kDa subunit)
          Length = 773

 Score = 38.9 bits (89), Expect = 0.019
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
 Frame = +3

Query: 3   VLETEIAQYNYEKLKAFDGDSKKIQRKTECFWEKLFKKNHKSANKRDGETWREAYIRNQS 182
           VLE  + +   ++L   +  +  +  +T+  W+    ++ K     + E+WRE Y+R Q 
Sbjct: 575 VLEPVLERCTPDQLYRIEECNHVLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQD 634

Query: 183 AQDYRLKEISERLKKNTVESLNA-IPK---AKLLTNSNLAKP 296
           A++ RL     RL  N + S +A  PK   AK+   +++AKP
Sbjct: 635 AREQRL-----RLLTNNIRSAHANKPKGRQAKMAFVNSVAKP 671
>sp|Q14241|ELOA1_HUMAN Transcription elongation factor B polypeptide 3 (RNA polymerase II
           transcription factor SIII subunit A1) (SIII p110)
           (Elongin A) (EloA) (Elongin 110 kDa subunit)
          Length = 772

 Score = 36.6 bits (83), Expect = 0.097
 Identities = 22/98 (22%), Positives = 50/98 (51%)
 Frame = +3

Query: 3   VLETEIAQYNYEKLKAFDGDSKKIQRKTECFWEKLFKKNHKSANKRDGETWREAYIRNQS 182
           VLE  + +   ++L   +  +  +  +T+  W+    ++ K     + E+WRE Y+R Q 
Sbjct: 576 VLEPVLERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQD 635

Query: 183 AQDYRLKEISERLKKNTVESLNAIPKAKLLTNSNLAKP 296
           A++ RL+ +++ ++           +AK+   +++AKP
Sbjct: 636 AREQRLRVLTKNIQFAHANKPKG-RQAKMAFVNSVAKP 672
>sp|Q96N68|CR015_HUMAN Hypothetical protein C18orf15
          Length = 181

 Score = 34.3 bits (77), Expect = 0.48
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 574 CLCMCARACVCVFVVKCTLIAIIIRFCV 657
           C+C+C   C CV+V  C L+ +    C+
Sbjct: 132 CMCVCVHVCACVYVCMCVLVCMCACACM 159

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 577 LCMCARACVCVFVVKCTLIAIIIRFCV 657
           +CMCA  CVCV V  C  + + +  C+
Sbjct: 127 VCMCACMCVCVHVCACVYVCMCVLVCM 153
>sp|Q8IYF1|ELOA2_HUMAN RNA polymerase II transcription factor SIII subunit A2 (Elongin A2)
           (EloA2) (Transcription elongation factor B polypeptide
           3B)
          Length = 753

 Score = 33.5 bits (75), Expect = 0.82
 Identities = 22/97 (22%), Positives = 48/97 (49%)
 Frame = +3

Query: 3   VLETEIAQYNYEKLKAFDGDSKKIQRKTECFWEKLFKKNHKSANKRDGETWREAYIRNQS 182
           VLE  +  +  ++L     D+  + R+T+        ++ K    ++ +TWRE Y+R   
Sbjct: 554 VLEPVLEGWRPDQLYRRKKDNHALVRETDELRRNHCFQDFKEEKPQENKTWREQYLRLPD 613

Query: 183 AQDYRLKEISERLKKNTVESLNAIPKAKLLTNSNLAK 293
           A + RL+ ++  ++     + N   +AK++   ++AK
Sbjct: 614 APEQRLRVMTTNIRSARGNNPNG-REAKMICFKSVAK 649
>sp|Q9Z1S5|SEPT3_MOUSE Neuronal-specific septin-3
          Length = 465

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 574 CLCMCARACVCVFVVKCTLIAIIIRFCVANDFQNLCFFSLTFSGTSH 714
           C+C+C   C+CV    C  + ++   CV      +C +   +SG  +
Sbjct: 377 CVCVCMYVCMCVMESACVYVCVMESACVC---VCMCVYVCVYSGVRY 420
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog (TRA-2 alpha)
          Length = 281

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 19/75 (25%), Positives = 39/75 (52%)
 Frame = -2

Query: 614 TNTHTHARAHIHKQYRIFRFTQMRCNKNTQLYFSRRFSSAFYQRKSQKSSTK*TNLSNGN 435
           + + + +R H H++Y     T+ R + + +   SR ++  + +R+S+  S     +SN  
Sbjct: 54  SKSRSRSRRHSHRRY-----TRSRSHSHRRRSRSRSYTPEYRRRRSRSHSP----MSNRR 104

Query: 434 EYTQTAASKPMNTCL 390
            +T + A+   NTCL
Sbjct: 105 RHTGSRANPDPNTCL 119
>sp|Q8NG92|O13H1_HUMAN Olfactory receptor 13H1
          Length = 308

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
 Frame = +1

Query: 544 LICVKRKIRYCLCMCARACVC---------VFVVKCTLIAIIIRFCVANDFQN-----LC 681
           ++ +   +RY + M    CVC         + +    ++++ + FC AN   +     L 
Sbjct: 123 VVAISNPLRYSVVMNGPVCVCLVATSWGTSLVLTAMLILSLRLHFCGANVINHFACEILS 182

Query: 682 FFSLTFSGTSHHFIMIMILKLF 747
              LT S TS +  MI+I  +F
Sbjct: 183 LIKLTCSDTSLNEFMILITSIF 204
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,386,076
Number of Sequences: 369166
Number of extensions: 1604073
Number of successful extensions: 4844
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4769
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)