Planaria EST Database


DrC_01714

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01714
         (840 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P33537|DPOM_NEUCR  Probable DNA polymerase                      32   1.7  
sp|P12675|ICAL_PIG  Calpastatin (Calpain inhibitor)                32   2.9  
sp|P51125|ICAL_MOUSE  Calpastatin (Calpain inhibitor)              31   3.7  
sp|P27314|RRPL_SEOU8  RNA-directed RNA polymerase (L protein)      30   6.4  
sp|P03008|TNP3_ECOLI  Transposase for transposon Tn3               30   6.4  
>sp|P33537|DPOM_NEUCR Probable DNA polymerase
          Length = 1021

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = +2

Query: 83  MEFGAKVDRIHRAVSFKQGIIFKSYIDFNSKKRAQTKNSFEKDFY*LINNSLYGKTVEN 259
           +E+G K++ +   V  K+   FK YI+  +  +  TK S +K    L+ N+LYG+T  N
Sbjct: 707 VEYGYKIEVLESYVFEKRDDPFKEYIEHFASIKDNTKGS-KKQMAKLLLNTLYGRTGMN 764
>sp|P12675|ICAL_PIG Calpastatin (Calpain inhibitor)
          Length = 713

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
 Frame = +2

Query: 317 SSKPQFKDTMEIA-DDLVAVLLGKELVTLDRPSYNGQAVID-LSKLCMYKLQYEEL---Q 481
           SSKP  K  M+ A DDL+  L G E    D  +Y G  V+D +S   + +L   E+    
Sbjct: 145 SSKPSGKSDMDAALDDLIDTLGGPEETEEDNTTYTGPEVLDPMSSTYIEELGKREVTLPP 204

Query: 482 SYRERLN 502
            YRE L+
Sbjct: 205 KYRELLD 211
>sp|P51125|ICAL_MOUSE Calpastatin (Calpain inhibitor)
          Length = 788

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 320 SKPQFKDTMEIA-DDLVAVLLGKELVTLDRPSYNGQAVID 436
           SKP  K  M+ A DDL+  L G E    D P Y G  V+D
Sbjct: 226 SKPSDKSGMDAALDDLIDTLGGHEDTNRDDPPYTGPVVLD 265
>sp|P27314|RRPL_SEOU8 RNA-directed RNA polymerase (L protein)
          Length = 2151

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
 Frame = +2

Query: 269 RMNIGLCNTEKKLITYSSKPQFKDTMEIADDLVAVLLGKELVTLDRPSYNGQAVIDLSKL 448
           +  +GL   E++L+T+  + + ++  +I   +VAV      ++   PS     V+   +L
Sbjct: 127 KYELGLKYLEQELMTFFHRGELQNPYKITFKVVAVRTDGSNISTQWPSARNDGVVQYMRL 186

Query: 449 CMYKLQY--------EELQSYRERLNCEINIIAGDTDSFF 544
              ++ Y        EE  +     N + NI +  T  +F
Sbjct: 187 VQAEISYVREHLVKTEERAALEAMFNLKFNISSLKTQPYF 226
>sp|P03008|TNP3_ECOLI Transposase for transposon Tn3
          Length = 1015

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +2

Query: 368  AVLLGKELVTLDRPSYNGQAVIDLSKL--CMYKLQYEELQSYRERLNCEIN 514
            A +L + L+  +RPS   QA+I++ ++   +Y L Y + + YR R+  ++N
Sbjct: 853  ASVLVRSLLKSERPSGLTQAIIEVGRINKTLYLLNYIDDEDYRRRILTQLN 903
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,677,950
Number of Sequences: 369166
Number of extensions: 1840673
Number of successful extensions: 3930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3930
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)