Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B01
(840 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33537|DPOM_NEUCR Probable DNA polymerase 32 1.7
sp|P12675|ICAL_PIG Calpastatin (Calpain inhibitor) 32 2.9
sp|P51125|ICAL_MOUSE Calpastatin (Calpain inhibitor) 31 3.7
sp|P27314|RRPL_SEOU8 RNA-directed RNA polymerase (L protein) 30 6.4
sp|P03008|TNP3_ECOLI Transposase for transposon Tn3 30 6.4
>sp|P33537|DPOM_NEUCR Probable DNA polymerase
Length = 1021
Score = 32.3 bits (72), Expect = 1.7
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +2
Query: 83 MEFGAKVDRIHRAVSFKQGIIFKSYIDFNSKKRAQTKNSFEKDFY*LINNSLYGKTVEN 259
+E+G K++ + V K+ FK YI+ + + TK S +K L+ N+LYG+T N
Sbjct: 707 VEYGYKIEVLESYVFEKRDDPFKEYIEHFASIKDNTKGS-KKQMAKLLLNTLYGRTGMN 764
>sp|P12675|ICAL_PIG Calpastatin (Calpain inhibitor)
Length = 713
Score = 31.6 bits (70), Expect = 2.9
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 317 SSKPQFKDTMEIA-DDLVAVLLGKELVTLDRPSYNGQAVID-LSKLCMYKLQYEEL---Q 481
SSKP K M+ A DDL+ L G E D +Y G V+D +S + +L E+
Sbjct: 145 SSKPSGKSDMDAALDDLIDTLGGPEETEEDNTTYTGPEVLDPMSSTYIEELGKREVTLPP 204
Query: 482 SYRERLN 502
YRE L+
Sbjct: 205 KYRELLD 211
>sp|P51125|ICAL_MOUSE Calpastatin (Calpain inhibitor)
Length = 788
Score = 31.2 bits (69), Expect = 3.7
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 320 SKPQFKDTMEIA-DDLVAVLLGKELVTLDRPSYNGQAVID 436
SKP K M+ A DDL+ L G E D P Y G V+D
Sbjct: 226 SKPSDKSGMDAALDDLIDTLGGHEDTNRDDPPYTGPVVLD 265
>sp|P27314|RRPL_SEOU8 RNA-directed RNA polymerase (L protein)
Length = 2151
Score = 30.4 bits (67), Expect = 6.4
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Frame = +2
Query: 269 RMNIGLCNTEKKLITYSSKPQFKDTMEIADDLVAVLLGKELVTLDRPSYNGQAVIDLSKL 448
+ +GL E++L+T+ + + ++ +I +VAV ++ PS V+ +L
Sbjct: 127 KYELGLKYLEQELMTFFHRGELQNPYKITFKVVAVRTDGSNISTQWPSARNDGVVQYMRL 186
Query: 449 CMYKLQY--------EELQSYRERLNCEINIIAGDTDSFF 544
++ Y EE + N + NI + T +F
Sbjct: 187 VQAEISYVREHLVKTEERAALEAMFNLKFNISSLKTQPYF 226
>sp|P03008|TNP3_ECOLI Transposase for transposon Tn3
Length = 1015
Score = 30.4 bits (67), Expect = 6.4
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +2
Query: 368 AVLLGKELVTLDRPSYNGQAVIDLSKL--CMYKLQYEELQSYRERLNCEIN 514
A +L + L+ +RPS QA+I++ ++ +Y L Y + + YR R+ ++N
Sbjct: 853 ASVLVRSLLKSERPSGLTQAIIEVGRINKTLYLLNYIDDEDYRRRILTQLN 903
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,677,950
Number of Sequences: 369166
Number of extensions: 1840673
Number of successful extensions: 3930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3930
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)