Planaria EST Database


DrC_01712

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01712
         (556 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8D2H9|MINC_WIGBR  Probable septum site-determining prote...    30   4.0  
sp|P53119|HUL5_YEAST  Probable ubiquitin--protein ligase HUL5      29   8.9  
sp|P24499|ATP6_TRYBB  ATP synthase a chain (ATPase protein 6)      29   8.9  
>sp|Q8D2H9|MINC_WIGBR Probable septum site-determining protein minC
          Length = 243

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 359 KYLIKNKACFNY*FNNFQKLIFKKLMFSIMEKDIFPNK*TANNLLKNY 502
           KY + NK C  +   NF  L+    ++ I EK+I+    T  N +KN+
Sbjct: 11  KYFMFNKVCLKFKIKNFNILVI--YLYDIKEKNIYK---TIKNKIKNF 53
>sp|P53119|HUL5_YEAST Probable ubiquitin--protein ligase HUL5
          Length = 910

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 108 EKLCIFNSFFSQNRLRLSLKIDYNFLNFYFQWS 10
           E++ +F  F + ++ RLSL  D+N +N +  W+
Sbjct: 515 ERVDLFYMFIALDKKRLSLDDDHNLINMFTPWA 547
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
          Length = 229

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 314 LFFFQNLVFLSV*LIKYLIKNKACFNY*FNNFQKLIFKKLMFSIMEKDIF 463
           LFFF +L +L + L  Y   ++ CF   FN    LIF  L+F + +  +F
Sbjct: 3   LFFFCDLFWLRLLLCMYYCVSRLCFIVYFNCLM-LIFDFLLFCLFDLYLF 51
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,671,939
Number of Sequences: 369166
Number of extensions: 630514
Number of successful extensions: 967
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)