Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_A18
(556 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8D2H9|MINC_WIGBR Probable septum site-determining prote... 30 4.0
sp|P53119|HUL5_YEAST Probable ubiquitin--protein ligase HUL5 29 8.9
sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6) 29 8.9
>sp|Q8D2H9|MINC_WIGBR Probable septum site-determining protein minC
Length = 243
Score = 30.0 bits (66), Expect = 4.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 359 KYLIKNKACFNY*FNNFQKLIFKKLMFSIMEKDIFPNK*TANNLLKNY 502
KY + NK C + NF L+ ++ I EK+I+ T N +KN+
Sbjct: 11 KYFMFNKVCLKFKIKNFNILVI--YLYDIKEKNIYK---TIKNKIKNF 53
>sp|P53119|HUL5_YEAST Probable ubiquitin--protein ligase HUL5
Length = 910
Score = 28.9 bits (63), Expect = 8.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 108 EKLCIFNSFFSQNRLRLSLKIDYNFLNFYFQWS 10
E++ +F F + ++ RLSL D+N +N + W+
Sbjct: 515 ERVDLFYMFIALDKKRLSLDDDHNLINMFTPWA 547
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 28.9 bits (63), Expect = 8.9
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 314 LFFFQNLVFLSV*LIKYLIKNKACFNY*FNNFQKLIFKKLMFSIMEKDIF 463
LFFF +L +L + L Y ++ CF FN LIF L+F + + +F
Sbjct: 3 LFFFCDLFWLRLLLCMYYCVSRLCFIVYFNCLM-LIFDFLLFCLFDLYLF 51
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,671,939
Number of Sequences: 369166
Number of extensions: 630514
Number of successful extensions: 967
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)