Planaria EST Database


DrC_01711

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01711
         (794 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32429|RL7A_CHICK  60S ribosomal protein L7a                   287   3e-77
sp|P62425|RL7A_RAT  60S ribosomal protein L7a >gi|54039239|s...   287   3e-77
sp|P12970|RL7A_MOUSE  60S ribosomal protein L7a (Surfeit loc...   286   3e-77
sp|O57592|RL7A_FUGRU  60S ribosomal protein L7a (Surfeit loc...   283   5e-76
sp|Q90YW2|RL7A_ICTPU  60S ribosomal protein L7a                   280   2e-75
sp|P46223|RL7A_DROME  60S ribosomal protein L7a                   271   2e-72
sp|Q966C6|RL7A_CAEEL  60S ribosomal protein L7a                   268   2e-71
sp|O76732|RL7A_ANOGA  60S ribosomal protein L7a                   256   5e-68
sp|P35685|RL7A_ORYSA  60S ribosomal protein L7a                   247   2e-65
sp|P49692|RL7A_ARATH  60S ribosomal protein L7a                   236   4e-62
>sp|P32429|RL7A_CHICK 60S ribosomal protein L7a
          Length = 266

 Score =  287 bits (734), Expect = 3e-77
 Identities = 141/232 (60%), Positives = 173/232 (74%)
 Frame = +1

Query: 1   APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
           AP P ++K K   KKVVNPLFE +PKNF IGQDIQPKRDLTRFVKWP+YIRLQRQ+SIL 
Sbjct: 13  APAPAVVK-KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILY 71

Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
           KRLK+P  INQF+ A+D+  A  ++KL  KYRPE+KQ               GK +T   
Sbjct: 72  KRLKVPPAINQFSQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEQKAAGKGDTPTK 131

Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
           +P +++ GV  VTTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+K KA LG
Sbjct: 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKSKARLG 191

Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
           ++V +KTC+ +A   VN EDK AL KL E + TN+N+R DEIR+H GG ++G
Sbjct: 192 RLVHRKTCTCVAFTQVNPEDKGALAKLVEAVKTNYNDRYDEIRRHWGGNVLG 243
>sp|P62425|RL7A_RAT 60S ribosomal protein L7a
 sp|P62424|RL7A_HUMAN 60S ribosomal protein L7a (Surfeit locus protein 3) (PLA-X
           polypeptide)
          Length = 266

 Score =  287 bits (734), Expect = 3e-77
 Identities = 140/232 (60%), Positives = 173/232 (74%)
 Frame = +1

Query: 1   APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
           AP P ++K K   KKVVNPLFE +PKNF IGQDIQPKRDLTRFVKWP+YIRLQRQ++IL 
Sbjct: 13  APAPAVVK-KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILY 71

Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
           KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQ               GK +    
Sbjct: 72  KRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTK 131

Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
           +P +++ GV  VTTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG
Sbjct: 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLG 191

Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
           ++V +KTC+ +A   VN+EDK AL KL E + TN+N+R DEIR+H GG ++G
Sbjct: 192 RLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLG 243
>sp|P12970|RL7A_MOUSE 60S ribosomal protein L7a (Surfeit locus protein 3)
          Length = 266

 Score =  286 bits (733), Expect = 3e-77
 Identities = 140/232 (60%), Positives = 172/232 (74%)
 Frame = +1

Query: 1   APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
           AP P ++K K   KKVVNPLFE +PKNF IGQDIQPKRDLTRFVKWP+YIRLQRQ++IL 
Sbjct: 13  APAPAVVK-KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILY 71

Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
           KRLK+P  INQF  A+D+  A  ++KL  KYRPE+KQ               GK +    
Sbjct: 72  KRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTK 131

Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
           +P +++ GV  VTTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG
Sbjct: 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLG 191

Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
            +V +KTC+ +A   VN+EDK AL KL E + TN+N+R DEIR+H GG ++G
Sbjct: 192 HLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLG 243
>sp|O57592|RL7A_FUGRU 60S ribosomal protein L7a (Surfeit locus protein 3)
          Length = 266

 Score =  283 bits (723), Expect = 5e-76
 Identities = 139/232 (59%), Positives = 171/232 (73%)
 Frame = +1

Query: 1   APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
           AP P + K K   KKVVNPLFE +PKNF IGQDIQPKRDLTRFVKWP+YIRLQRQ+SIL 
Sbjct: 13  APAPSVAK-KHEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILY 71

Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
           KRLK+P  INQF  A+D+  A  + KL  KYRPE+KQ               GK +    
Sbjct: 72  KRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKQEKKKRLLARAEQKAAGKGDAPTK 131

Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
           +P +++ GV  +T+LVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG
Sbjct: 132 RPPVLRAGVNTITSLVENKKAQLVVIAHDVDPIELVIFLPALCRKMGVPYCIVKGKARLG 191

Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
           ++V +KTC+++A    N EDK AL KL E + TN+N+R +EIR+H GGGI+G
Sbjct: 192 RLVHRKTCTSVAFTQTNPEDKGALAKLVEAIKTNYNDRYEEIRRHWGGGILG 243
>sp|Q90YW2|RL7A_ICTPU 60S ribosomal protein L7a
          Length = 266

 Score =  280 bits (717), Expect = 2e-75
 Identities = 138/232 (59%), Positives = 169/232 (72%)
 Frame = +1

Query: 1   APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
           AP P + K   +KK VVNPLFE +PKNF IGQDIQPKRDLTRFVKWP+Y+RLQR  SIL 
Sbjct: 13  APAPSVAKKHEVKK-VVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYVRLQRHGSILY 71

Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
           KRLK+P  INQFN A+D+  A  + KL  KYRPE+KQ               GK +    
Sbjct: 72  KRLKVPPAINQFNQALDRQTATQLFKLAHKYRPETKQEKKRRLLARAEQKAAGKGDVPTK 131

Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
           +P +V+ GV  VT+LVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG
Sbjct: 132 RPPVVRAGVNTVTSLVESKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKARLG 191

Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
           ++V +KTC+++     N ED+AAL KL E + TN+N+R +EIR+H GG IMG
Sbjct: 192 RLVHRKTCTSVCFTQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMG 243
>sp|P46223|RL7A_DROME 60S ribosomal protein L7a
          Length = 271

 Score =  271 bits (692), Expect = 2e-72
 Identities = 135/232 (58%), Positives = 169/232 (72%)
 Frame = +1

Query: 1   APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
           AP P  +K K + KKVVN LFE +PKNF IGQ++QPKRDL+RFV+WPKYIR+QRQK++L 
Sbjct: 18  APAPLAVK-KPVVKKVVNQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQ 76

Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
           KRLK+P  I+QF+  +DK  A  + KLL KYRPES                +GK    + 
Sbjct: 77  KRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKK 136

Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
           KP+ V  G   VT L+EQKKAQ+VVIAHDVDP+E+V+ LPALCRKMGVPYCI+KGKA LG
Sbjct: 137 KPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLG 196

Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
           ++VR+KTC+ LAL  V+  DKA  GK+ E + TNFN R +EIR+H GGGI+G
Sbjct: 197 RLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILG 248
>sp|Q966C6|RL7A_CAEEL 60S ribosomal protein L7a
          Length = 265

 Score =  268 bits (684), Expect = 2e-71
 Identities = 133/232 (57%), Positives = 172/232 (74%), Gaps = 1/232 (0%)
 Frame = +1

Query: 1   APVPEIIKAKT-LKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSIL 177
           A VP  I+A+T ++K+V NPLFE + +NF IGQDIQPK+D+TRFVKWPKYIRLQRQ +IL
Sbjct: 12  AAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAIL 71

Query: 178 NKRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIE 357
            KRLK+P  INQF +A+D  +A+   KLL KYRPES +               GK E + 
Sbjct: 72  QKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVT 131

Query: 358 AKPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAIL 537
            +P  V++GV  +T LVE ++AQ+V+IAHDV+P+EIV+HLPALCRK  VPY I+KGKA L
Sbjct: 132 KRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASL 191

Query: 538 GQIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIM 693
           G +VR+KT +A+ALV+VN EDK+AL KL E +  NF+ R +EIRKH GGG+M
Sbjct: 192 GTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVM 243
>sp|O76732|RL7A_ANOGA 60S ribosomal protein L7a
          Length = 271

 Score =  256 bits (654), Expect = 5e-68
 Identities = 125/232 (53%), Positives = 160/232 (68%)
 Frame = +1

Query: 1   APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
           AP P     K   KKVVNPLFE + KN+ IGQ++QPKRDL+RFVKWPKYIR+QR ++IL 
Sbjct: 18  APAPLAKPKKVEVKKVVNPLFEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQ 77

Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
           KRLK+P  INQF   +DKP A+ ++K   KYRPE+                 GK E    
Sbjct: 78  KRLKIPPPINQFTQTLDKPTAQQVMKCWKKYRPENPIARVQRLKAKAEAKAAGKEEPPSK 137

Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
           +   ++ G+  V  +VEQKKAQ+V+IAHDVDPIE+V++LPALCRKMGVPYCI+KGKA LG
Sbjct: 138 RANQLRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLG 197

Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
            +V +KTC+ +AL      DK  L KL E + TNFN+R D+IR+H GGG++G
Sbjct: 198 TLVYRKTCTCVALTQFENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLG 249
>sp|P35685|RL7A_ORYSA 60S ribosomal protein L7a
          Length = 258

 Score =  247 bits (631), Expect = 2e-65
 Identities = 130/233 (55%), Positives = 158/233 (67%), Gaps = 1/233 (0%)
 Frame = +1

Query: 1   APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
           APVP    AK   +KV NPLFE +PK F IG  + PK+DL RFVKWPK +R+QRQ+ IL 
Sbjct: 9   APVP----AKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILK 64

Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
           +RLK+P  +NQF   +DK  A ++ K+L KYRPE K               EGK  T+EA
Sbjct: 65  QRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGK--TVEA 122

Query: 361 K-PALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAIL 537
           K P +VKYG+  VT L+EQ KAQ+VVIAHDVDPIE+V+ LPALCRKM VPYCI+KGKA L
Sbjct: 123 KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARL 182

Query: 538 GQIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
           G IV KKT S L L  V  EDK    K+ E +  NFN++ DE+RK  GGG+MG
Sbjct: 183 GSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMG 235
>sp|P49692|RL7A_ARATH 60S ribosomal protein L7a
          Length = 257

 Score =  236 bits (603), Expect = 4e-62
 Identities = 121/228 (53%), Positives = 152/228 (66%)
 Frame = +1

Query: 13  EIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILNKRLK 192
           ++   K   +KV NPLFE +PK F IG  + PK+DL+R++KWPK IRLQRQK IL +RLK
Sbjct: 8   KVAAKKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLK 67

Query: 193 MPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEAKPAL 372
           +P  +NQF   +DK  A S+ K+L KYRPE K               EGK    + KP +
Sbjct: 68  VPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPIV 126

Query: 373 VKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILGQIVR 552
           VKYG+  VT L+EQ KAQ+VVIAHDVDPIE+V+ LPALCRKM VPYCI+KGK+ LG +V 
Sbjct: 127 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVH 186

Query: 553 KKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
           +KT S L L  V  EDK    K+ E +  NFN++ +E RK  GGGIMG
Sbjct: 187 QKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMG 234
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,678,886
Number of Sequences: 369166
Number of extensions: 1302817
Number of successful extensions: 3317
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3308
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)