Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_A09
(794 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P32429|RL7A_CHICK 60S ribosomal protein L7a 287 3e-77
sp|P62425|RL7A_RAT 60S ribosomal protein L7a >gi|54039239|s... 287 3e-77
sp|P12970|RL7A_MOUSE 60S ribosomal protein L7a (Surfeit loc... 286 3e-77
sp|O57592|RL7A_FUGRU 60S ribosomal protein L7a (Surfeit loc... 283 5e-76
sp|Q90YW2|RL7A_ICTPU 60S ribosomal protein L7a 280 2e-75
sp|P46223|RL7A_DROME 60S ribosomal protein L7a 271 2e-72
sp|Q966C6|RL7A_CAEEL 60S ribosomal protein L7a 268 2e-71
sp|O76732|RL7A_ANOGA 60S ribosomal protein L7a 256 5e-68
sp|P35685|RL7A_ORYSA 60S ribosomal protein L7a 247 2e-65
sp|P49692|RL7A_ARATH 60S ribosomal protein L7a 236 4e-62
>sp|P32429|RL7A_CHICK 60S ribosomal protein L7a
Length = 266
Score = 287 bits (734), Expect = 3e-77
Identities = 141/232 (60%), Positives = 173/232 (74%)
Frame = +1
Query: 1 APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
AP P ++K K KKVVNPLFE +PKNF IGQDIQPKRDLTRFVKWP+YIRLQRQ+SIL
Sbjct: 13 APAPAVVK-KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILY 71
Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
KRLK+P INQF+ A+D+ A ++KL KYRPE+KQ GK +T
Sbjct: 72 KRLKVPPAINQFSQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEQKAAGKGDTPTK 131
Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
+P +++ GV VTTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+K KA LG
Sbjct: 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKSKARLG 191
Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
++V +KTC+ +A VN EDK AL KL E + TN+N+R DEIR+H GG ++G
Sbjct: 192 RLVHRKTCTCVAFTQVNPEDKGALAKLVEAVKTNYNDRYDEIRRHWGGNVLG 243
>sp|P62425|RL7A_RAT 60S ribosomal protein L7a
sp|P62424|RL7A_HUMAN 60S ribosomal protein L7a (Surfeit locus protein 3) (PLA-X
polypeptide)
Length = 266
Score = 287 bits (734), Expect = 3e-77
Identities = 140/232 (60%), Positives = 173/232 (74%)
Frame = +1
Query: 1 APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
AP P ++K K KKVVNPLFE +PKNF IGQDIQPKRDLTRFVKWP+YIRLQRQ++IL
Sbjct: 13 APAPAVVK-KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILY 71
Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
KRLK+P INQF A+D+ A ++KL KYRPE+KQ GK +
Sbjct: 72 KRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTK 131
Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
+P +++ GV VTTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG
Sbjct: 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLG 191
Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
++V +KTC+ +A VN+EDK AL KL E + TN+N+R DEIR+H GG ++G
Sbjct: 192 RLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLG 243
>sp|P12970|RL7A_MOUSE 60S ribosomal protein L7a (Surfeit locus protein 3)
Length = 266
Score = 286 bits (733), Expect = 3e-77
Identities = 140/232 (60%), Positives = 172/232 (74%)
Frame = +1
Query: 1 APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
AP P ++K K KKVVNPLFE +PKNF IGQDIQPKRDLTRFVKWP+YIRLQRQ++IL
Sbjct: 13 APAPAVVK-KQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILY 71
Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
KRLK+P INQF A+D+ A ++KL KYRPE+KQ GK +
Sbjct: 72 KRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTK 131
Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
+P +++ GV VTTLVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG
Sbjct: 132 RPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLG 191
Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
+V +KTC+ +A VN+EDK AL KL E + TN+N+R DEIR+H GG ++G
Sbjct: 192 HLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLG 243
>sp|O57592|RL7A_FUGRU 60S ribosomal protein L7a (Surfeit locus protein 3)
Length = 266
Score = 283 bits (723), Expect = 5e-76
Identities = 139/232 (59%), Positives = 171/232 (73%)
Frame = +1
Query: 1 APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
AP P + K K KKVVNPLFE +PKNF IGQDIQPKRDLTRFVKWP+YIRLQRQ+SIL
Sbjct: 13 APAPSVAK-KHEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILY 71
Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
KRLK+P INQF A+D+ A + KL KYRPE+KQ GK +
Sbjct: 72 KRLKVPPAINQFTQALDRQTATQLFKLAHKYRPETKQEKKKRLLARAEQKAAGKGDAPTK 131
Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
+P +++ GV +T+LVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG
Sbjct: 132 RPPVLRAGVNTITSLVENKKAQLVVIAHDVDPIELVIFLPALCRKMGVPYCIVKGKARLG 191
Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
++V +KTC+++A N EDK AL KL E + TN+N+R +EIR+H GGGI+G
Sbjct: 192 RLVHRKTCTSVAFTQTNPEDKGALAKLVEAIKTNYNDRYEEIRRHWGGGILG 243
>sp|Q90YW2|RL7A_ICTPU 60S ribosomal protein L7a
Length = 266
Score = 280 bits (717), Expect = 2e-75
Identities = 138/232 (59%), Positives = 169/232 (72%)
Frame = +1
Query: 1 APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
AP P + K +KK VVNPLFE +PKNF IGQDIQPKRDLTRFVKWP+Y+RLQR SIL
Sbjct: 13 APAPSVAKKHEVKK-VVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYVRLQRHGSILY 71
Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
KRLK+P INQFN A+D+ A + KL KYRPE+KQ GK +
Sbjct: 72 KRLKVPPAINQFNQALDRQTATQLFKLAHKYRPETKQEKKRRLLARAEQKAAGKGDVPTK 131
Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
+P +V+ GV VT+LVE KKAQ+VVIAHDVDPIE+V+ LPALCRKMGVPYCI+KGKA LG
Sbjct: 132 RPPVVRAGVNTVTSLVESKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKARLG 191
Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
++V +KTC+++ N ED+AAL KL E + TN+N+R +EIR+H GG IMG
Sbjct: 192 RLVHRKTCTSVCFTQTNPEDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMG 243
>sp|P46223|RL7A_DROME 60S ribosomal protein L7a
Length = 271
Score = 271 bits (692), Expect = 2e-72
Identities = 135/232 (58%), Positives = 169/232 (72%)
Frame = +1
Query: 1 APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
AP P +K K + KKVVN LFE +PKNF IGQ++QPKRDL+RFV+WPKYIR+QRQK++L
Sbjct: 18 APAPLAVK-KPVVKKVVNQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQ 76
Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
KRLK+P I+QF+ +DK A + KLL KYRPES +GK +
Sbjct: 77 KRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKK 136
Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
KP+ V G VT L+EQKKAQ+VVIAHDVDP+E+V+ LPALCRKMGVPYCI+KGKA LG
Sbjct: 137 KPSYVSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIVKGKARLG 196
Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
++VR+KTC+ LAL V+ DKA GK+ E + TNFN R +EIR+H GGGI+G
Sbjct: 197 RLVRRKTCTTLALTTVDNNDKANFGKVLEAVKTNFNERHEEIRRHWGGGILG 248
>sp|Q966C6|RL7A_CAEEL 60S ribosomal protein L7a
Length = 265
Score = 268 bits (684), Expect = 2e-71
Identities = 133/232 (57%), Positives = 172/232 (74%), Gaps = 1/232 (0%)
Frame = +1
Query: 1 APVPEIIKAKT-LKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSIL 177
A VP I+A+T ++K+V NPLFE + +NF IGQDIQPK+D+TRFVKWPKYIRLQRQ +IL
Sbjct: 12 AAVPAHIRAQTQVQKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAIL 71
Query: 178 NKRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIE 357
KRLK+P INQF +A+D +A+ KLL KYRPES + GK E +
Sbjct: 72 QKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVT 131
Query: 358 AKPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAIL 537
+P V++GV +T LVE ++AQ+V+IAHDV+P+EIV+HLPALCRK VPY I+KGKA L
Sbjct: 132 KRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASL 191
Query: 538 GQIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIM 693
G +VR+KT +A+ALV+VN EDK+AL KL E + NF+ R +EIRKH GGG+M
Sbjct: 192 GTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVM 243
>sp|O76732|RL7A_ANOGA 60S ribosomal protein L7a
Length = 271
Score = 256 bits (654), Expect = 5e-68
Identities = 125/232 (53%), Positives = 160/232 (68%)
Frame = +1
Query: 1 APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
AP P K KKVVNPLFE + KN+ IGQ++QPKRDL+RFVKWPKYIR+QR ++IL
Sbjct: 18 APAPLAKPKKVEVKKVVNPLFEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQ 77
Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
KRLK+P INQF +DKP A+ ++K KYRPE+ GK E
Sbjct: 78 KRLKIPPPINQFTQTLDKPTAQQVMKCWKKYRPENPIARVQRLKAKAEAKAAGKEEPPSK 137
Query: 361 KPALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILG 540
+ ++ G+ V +VEQKKAQ+V+IAHDVDPIE+V++LPALCRKMGVPYCI+KGKA LG
Sbjct: 138 RANQLRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLG 197
Query: 541 QIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
+V +KTC+ +AL DK L KL E + TNFN+R D+IR+H GGG++G
Sbjct: 198 TLVYRKTCTCVALTQFENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLG 249
>sp|P35685|RL7A_ORYSA 60S ribosomal protein L7a
Length = 258
Score = 247 bits (631), Expect = 2e-65
Identities = 130/233 (55%), Positives = 158/233 (67%), Gaps = 1/233 (0%)
Frame = +1
Query: 1 APVPEIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILN 180
APVP AK +KV NPLFE +PK F IG + PK+DL RFVKWPK +R+QRQ+ IL
Sbjct: 9 APVP----AKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILK 64
Query: 181 KRLKMPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEA 360
+RLK+P +NQF +DK A ++ K+L KYRPE K EGK T+EA
Sbjct: 65 QRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGK--TVEA 122
Query: 361 K-PALVKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAIL 537
K P +VKYG+ VT L+EQ KAQ+VVIAHDVDPIE+V+ LPALCRKM VPYCI+KGKA L
Sbjct: 123 KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARL 182
Query: 538 GQIVRKKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
G IV KKT S L L V EDK K+ E + NFN++ DE+RK GGG+MG
Sbjct: 183 GSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMG 235
>sp|P49692|RL7A_ARATH 60S ribosomal protein L7a
Length = 257
Score = 236 bits (603), Expect = 4e-62
Identities = 121/228 (53%), Positives = 152/228 (66%)
Frame = +1
Query: 13 EIIKAKTLKKKVVNPLFESKPKNFAIGQDIQPKRDLTRFVKWPKYIRLQRQKSILNKRLK 192
++ K +KV NPLFE +PK F IG + PK+DL+R++KWPK IRLQRQK IL +RLK
Sbjct: 8 KVAAKKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLK 67
Query: 193 MPAVINQFNSAIDKPNAKSIVKLLGKYRPESKQXXXXXXXXXXXXXVEGKAETIEAKPAL 372
+P +NQF +DK A S+ K+L KYRPE K EGK + KP +
Sbjct: 68 VPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPIV 126
Query: 373 VKYGVREVTTLVEQKKAQMVVIAHDVDPIEIVMHLPALCRKMGVPYCILKGKAILGQIVR 552
VKYG+ VT L+EQ KAQ+VVIAHDVDPIE+V+ LPALCRKM VPYCI+KGK+ LG +V
Sbjct: 127 VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVH 186
Query: 553 KKTCSALALVNVNAEDKAALGKLTEILMTNFNNRGDEIRKHVGGGIMG 696
+KT S L L V EDK K+ E + NFN++ +E RK GGGIMG
Sbjct: 187 QKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMG 234
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,678,886
Number of Sequences: 369166
Number of extensions: 1302817
Number of successful extensions: 3317
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3308
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)