Planaria EST Database


DrC_01709

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01709
         (500 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02440|MYO5A_CHICK  Myosin-5A (Myosin Va) (Dilute myosin ...    37   0.020
sp|Q7Z3E2|CJ118_HUMAN  Protein C10orf118 (CTCL tumor antigen...    36   0.045
sp|Q48254|HPAA2_HELPY  Neuraminyllactose-binding hemagglutin...    36   0.058
sp|P13535|MYH8_HUMAN  Myosin-8 (Myosin heavy chain, skeletal...    35   0.076
sp|O75330|HMMR_HUMAN  Hyaluronan mediated motility receptor ...    35   0.076
sp|P49454|CENPF_HUMAN  CENP-F kinetochore protein (Centromer...    35   0.100
sp|P25386|USO1_YEAST  Intracellular protein transport protei...    35   0.100
sp|P47037|SMC3_YEAST  Structural maintenance of chromosome 3...    35   0.100
sp|Q8C9S4|CJ118_MOUSE  Protein C10orf118 homolog (Oocyte-tes...    35   0.13 
sp|Q92351|PCP1_SCHPO  Spindle pole body protein pcp1               35   0.13 
>sp|Q02440|MYO5A_CHICK Myosin-5A (Myosin Va) (Dilute myosin heavy chain, non-muscle) (Myosin
            heavy chain p190) (Myosin-V)
          Length = 1829

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
 Frame = +1

Query: 1    EPRIDINAMRVHLNNENYSHSALLMDSMQNMKNEIDCLKENFHLKEVN---ENSLKIGND 171
            +P+ D N M         + S +L++ +Q MK++ +  +    LKE N   E+ L+    
Sbjct: 1282 QPKEDKNTM---------TDSTILLEDVQKMKDKGEIAQAYIGLKETNRLLESQLQSQKK 1332

Query: 172  RLQQNIESLHQKIDEIKEESQYKQNLINDLMNKLDESNILKSI 300
              +  +ESL  +I  +KEE+  +Q L+   +    E+ I  S+
Sbjct: 1333 SHENELESLRGEIQSLKEENNRQQQLLAQNLQLPPEARIEASL 1375
>sp|Q7Z3E2|CJ118_HUMAN Protein C10orf118 (CTCL tumor antigen HD-CL-01/L14-2)
          Length = 898

 Score = 36.2 bits (82), Expect = 0.045
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 17/87 (19%)
 Frame = +1

Query: 73  MDSMQNMKNEIDCLKENFHLKE---------VNENSLKIGN--------DRLQQNIESLH 201
           MD ++ ++ ++ CL++     E         +N    +I N        D+LQ+ ++   
Sbjct: 495 MDELRTLRTKVKCLEDERLRTEDELSKYKEIINRQKAEIQNLLDKVKTADQLQEQLQRGK 554

Query: 202 QKIDEIKEESQYKQNLINDLMNKLDES 282
           Q+I+ +KEE +   +LINDL   ++ S
Sbjct: 555 QEIENLKEEVESLNSLINDLQKDIEGS 581
>sp|Q48254|HPAA2_HELPY Neuraminyllactose-binding hemagglutinin precursor
           (N-acetylneuraminyllactose-binding fibrillar
           hemagglutinin receptor-binding subunit) (NLBH)
           (Flagellar sheath adhesin)
          Length = 260

 Score = 35.8 bits (81), Expect = 0.058
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 127 HLKEVNENSLKIGNDRLQQNIESLHQKIDEIKEESQYKQNLINDLMNKLDESNILK 294
           H+ E NE +LK+      + +++L +KI  ++   QY  N+  +  NK     +LK
Sbjct: 31  HIIETNEVALKLNYHPASEKVQALDEKILLLRPAFQYSDNIAKEYENKFKNQTVLK 86
>sp|P13535|MYH8_HUMAN Myosin-8 (Myosin heavy chain, skeletal muscle, perinatal)
            (MyHC-perinatal)
          Length = 1937

 Score = 35.4 bits (80), Expect = 0.076
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 21/104 (20%)
 Frame = +1

Query: 13   DINAMRVHLNNENYSHSALLM-------DSMQNMKNEIDCLKENFHLKEVNENSLKIGND 171
            +   +R  L      H A++        DSM  +  +ID L+      E  ++ LK+  D
Sbjct: 1173 EFQKLRRDLEEATLQHEAMVAALRKKHADSMAELGEQIDNLQRVKQKLEKEKSELKMETD 1232

Query: 172  RLQQNIE--------------SLHQKIDEIKEESQYKQNLINDL 261
             L  N E              SL  ++ E+K + + +Q LINDL
Sbjct: 1233 DLSSNAEAISKAKGNLEKMCRSLEDQVSELKTKEEEQQRLINDL 1276
>sp|O75330|HMMR_HUMAN Hyaluronan mediated motility receptor (Intracellular hyaluronic
           acid binding protein) (Receptor for hyaluronan-mediated
           motility) (CD168 antigen)
          Length = 724

 Score = 35.4 bits (80), Expect = 0.076
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
 Frame = +1

Query: 43  NENYSHSALLMDSMQNMKNEIDCLKENFHLKEVNENSLKIGNDRLQQNIE---SLHQKID 213
           N N  H+  L   MQN+K +   + E    +++ +  L+I +  LQQ  E   SLHQK+ 
Sbjct: 305 NRNREHNENLNAEMQNLKQKF--ILEQQEREKLQQKELQI-DSLLQQEKELSSSLHQKLC 361

Query: 214 EIKEESQYKQNLI-NDLMNKLDESNILK 294
             +EE   ++NL   +L   LDE + L+
Sbjct: 362 SFQEEMVKEKNLFEEELKQTLDELDKLQ 389
>sp|P49454|CENPF_HUMAN CENP-F kinetochore protein (Centromere protein F) (Mitosin) (AH
            antigen)
          Length = 3210

 Score = 35.0 bits (79), Expect = 0.100
 Identities = 27/96 (28%), Positives = 46/96 (47%)
 Frame = +1

Query: 7    RIDINAMRVHLNNENYSHSALLMDSMQNMKNEIDCLKENFHLKEVNENSLKIGNDRLQQN 186
            R +I   ++ L+     H ALL+D+ +  + EI   +E    KE   +S K+  D L+ +
Sbjct: 2789 REEIAEYQLRLHEAEKKHQALLLDTNKQYEVEIQTYREKLTSKEECLSSQKLEIDLLKSS 2848

Query: 187  IESLHQKIDEIKEESQYKQNLINDLMNKLDESNILK 294
             E L+   + +K  +Q  + L    M+ L   N LK
Sbjct: 2849 KEELN---NSLKATTQILEELKKTKMDNLKYVNQLK 2881

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
 Frame = +1

Query: 37  LNNENYSHSALLMDSMQNMKNEIDCLKENFHLKEVNENSLKIGNDRLQQNIESLHQKI-- 210
           L+ E     A L   +Q  KN  + L+          + L     +L+ N+E   QK+  
Sbjct: 410 LDQECIQMKARLTQELQQAKNMHNVLQAEL-------DKLTSVKQQLENNLEEFKQKLCR 462

Query: 211 -DEIKEESQYKQNLINDLMNKL-DESNILKS 297
            ++  + SQ K+N +   M ++  E+N+LKS
Sbjct: 463 AEQAFQASQIKENELRRSMEEMKKENNLLKS 493
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
          Length = 1790

 Score = 35.0 bits (79), Expect = 0.100
 Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
 Frame = +1

Query: 16   INAMRVHLNNENYSHSALLMDSMQNMKNEIDCLKE-----NFHLKEVN--ENSLKIGNDR 174
            +N     L  +N ++ A L++S++++++E   +KE     NF  KEV+  E+ LK   D+
Sbjct: 1228 LNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDK 1287

Query: 175  LQQNIESLHQKIDEIKEESQYKQNLINDLMNKL 273
              + +E L ++ ++IKEE   K   +   + K+
Sbjct: 1288 NSKYLE-LQKESEKIKEELDAKTTELKIQLEKI 1319

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = +1

Query: 46   ENYSHSALLMDSMQNMKNEIDCLKENFHLK----EVNENSLKIGNDRLQQNIESLHQKID 213
            E+ + S++ + ++QN  + +   KENF ++    E N   LK     L+Q  E +  K D
Sbjct: 987  ESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKSD 1046

Query: 214  EIKEESQYKQNLINDLMNKLDESN 285
              K+E + + +L+ + +     +N
Sbjct: 1047 SSKDEYESQISLLKEKLETATTAN 1070
>sp|P47037|SMC3_YEAST Structural maintenance of chromosome 3 (DA-box protein SMC3)
          Length = 1230

 Score = 35.0 bits (79), Expect = 0.100
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
 Frame = +1

Query: 34  HLNNENYSHSALL--MDSMQNMKNEIDCLKENFHLKEVNENSLKIGNDR--LQQNIESLH 201
           +LN     H  +L  +D ++N  N+ID       + +VN N  K+ NDR  +  NIE   
Sbjct: 690 NLNESRSQHKKILEELDFVRNELNDIDT-----KIDQVNGNIRKVSNDRESVLTNIEVYR 744

Query: 202 QKIDEIKEESQYKQNLINDLMNKLDESN 285
             ++  K E    +  +N ++ KL++ N
Sbjct: 745 TSLNTKKNEKLILEESLNAIILKLEKLN 772
>sp|Q8C9S4|CJ118_MOUSE Protein C10orf118 homolog (Oocyte-testis gene 1 protein)
          Length = 917

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
 Frame = +1

Query: 73  MDSMQNMKNEIDCLKENFHLKE---------VNENSLKIGN--------DRLQQNIESLH 201
           MD ++ ++ +  CL++     E         +N    +I N        D+L + ++S  
Sbjct: 514 MDELRTLRTKAKCLEDERLRTEDELSKYREIINRQKSEIQNLLDKVKITDQLHEQLQSGK 573

Query: 202 QKIDEIKEESQYKQNLINDLMNKLDES 282
           Q+I+ +KEE +   +LINDL   ++ S
Sbjct: 574 QEIEHLKEEMESLNSLINDLQKDIEGS 600
>sp|Q92351|PCP1_SCHPO Spindle pole body protein pcp1
          Length = 1208

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +1

Query: 43  NENYSHSALLMDSMQNMKNEIDCLKENFHLKEVNENSLKIGNDRLQQNIESLHQKIDEIK 222
           NE   +   +M   ++++ E D L+      E + NSL++    L   IESL  +  EI 
Sbjct: 417 NEEGKNFEDIMLQFRSLEEERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREID 476

Query: 223 EESQYKQNLINDLMNK-LDESNI-LKSIT 303
           EE  + + L +   +K L E+NI L+ +T
Sbjct: 477 EEKNHLRLLASKNSDKALAETNIRLQEVT 505
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.312    0.130    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,366,352
Number of Sequences: 369166
Number of extensions: 667732
Number of successful extensions: 2474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2459
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)