Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_A04
(500 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02440|MYO5A_CHICK Myosin-5A (Myosin Va) (Dilute myosin ... 37 0.020
sp|Q7Z3E2|CJ118_HUMAN Protein C10orf118 (CTCL tumor antigen... 36 0.045
sp|Q48254|HPAA2_HELPY Neuraminyllactose-binding hemagglutin... 36 0.058
sp|P13535|MYH8_HUMAN Myosin-8 (Myosin heavy chain, skeletal... 35 0.076
sp|O75330|HMMR_HUMAN Hyaluronan mediated motility receptor ... 35 0.076
sp|P49454|CENPF_HUMAN CENP-F kinetochore protein (Centromer... 35 0.100
sp|P25386|USO1_YEAST Intracellular protein transport protei... 35 0.100
sp|P47037|SMC3_YEAST Structural maintenance of chromosome 3... 35 0.100
sp|Q8C9S4|CJ118_MOUSE Protein C10orf118 homolog (Oocyte-tes... 35 0.13
sp|Q92351|PCP1_SCHPO Spindle pole body protein pcp1 35 0.13
>sp|Q02440|MYO5A_CHICK Myosin-5A (Myosin Va) (Dilute myosin heavy chain, non-muscle) (Myosin
heavy chain p190) (Myosin-V)
Length = 1829
Score = 37.4 bits (85), Expect = 0.020
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Frame = +1
Query: 1 EPRIDINAMRVHLNNENYSHSALLMDSMQNMKNEIDCLKENFHLKEVN---ENSLKIGND 171
+P+ D N M + S +L++ +Q MK++ + + LKE N E+ L+
Sbjct: 1282 QPKEDKNTM---------TDSTILLEDVQKMKDKGEIAQAYIGLKETNRLLESQLQSQKK 1332
Query: 172 RLQQNIESLHQKIDEIKEESQYKQNLINDLMNKLDESNILKSI 300
+ +ESL +I +KEE+ +Q L+ + E+ I S+
Sbjct: 1333 SHENELESLRGEIQSLKEENNRQQQLLAQNLQLPPEARIEASL 1375
>sp|Q7Z3E2|CJ118_HUMAN Protein C10orf118 (CTCL tumor antigen HD-CL-01/L14-2)
Length = 898
Score = 36.2 bits (82), Expect = 0.045
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 17/87 (19%)
Frame = +1
Query: 73 MDSMQNMKNEIDCLKENFHLKE---------VNENSLKIGN--------DRLQQNIESLH 201
MD ++ ++ ++ CL++ E +N +I N D+LQ+ ++
Sbjct: 495 MDELRTLRTKVKCLEDERLRTEDELSKYKEIINRQKAEIQNLLDKVKTADQLQEQLQRGK 554
Query: 202 QKIDEIKEESQYKQNLINDLMNKLDES 282
Q+I+ +KEE + +LINDL ++ S
Sbjct: 555 QEIENLKEEVESLNSLINDLQKDIEGS 581
>sp|Q48254|HPAA2_HELPY Neuraminyllactose-binding hemagglutinin precursor
(N-acetylneuraminyllactose-binding fibrillar
hemagglutinin receptor-binding subunit) (NLBH)
(Flagellar sheath adhesin)
Length = 260
Score = 35.8 bits (81), Expect = 0.058
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 127 HLKEVNENSLKIGNDRLQQNIESLHQKIDEIKEESQYKQNLINDLMNKLDESNILK 294
H+ E NE +LK+ + +++L +KI ++ QY N+ + NK +LK
Sbjct: 31 HIIETNEVALKLNYHPASEKVQALDEKILLLRPAFQYSDNIAKEYENKFKNQTVLK 86
>sp|P13535|MYH8_HUMAN Myosin-8 (Myosin heavy chain, skeletal muscle, perinatal)
(MyHC-perinatal)
Length = 1937
Score = 35.4 bits (80), Expect = 0.076
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 21/104 (20%)
Frame = +1
Query: 13 DINAMRVHLNNENYSHSALLM-------DSMQNMKNEIDCLKENFHLKEVNENSLKIGND 171
+ +R L H A++ DSM + +ID L+ E ++ LK+ D
Sbjct: 1173 EFQKLRRDLEEATLQHEAMVAALRKKHADSMAELGEQIDNLQRVKQKLEKEKSELKMETD 1232
Query: 172 RLQQNIE--------------SLHQKIDEIKEESQYKQNLINDL 261
L N E SL ++ E+K + + +Q LINDL
Sbjct: 1233 DLSSNAEAISKAKGNLEKMCRSLEDQVSELKTKEEEQQRLINDL 1276
>sp|O75330|HMMR_HUMAN Hyaluronan mediated motility receptor (Intracellular hyaluronic
acid binding protein) (Receptor for hyaluronan-mediated
motility) (CD168 antigen)
Length = 724
Score = 35.4 bits (80), Expect = 0.076
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = +1
Query: 43 NENYSHSALLMDSMQNMKNEIDCLKENFHLKEVNENSLKIGNDRLQQNIE---SLHQKID 213
N N H+ L MQN+K + + E +++ + L+I + LQQ E SLHQK+
Sbjct: 305 NRNREHNENLNAEMQNLKQKF--ILEQQEREKLQQKELQI-DSLLQQEKELSSSLHQKLC 361
Query: 214 EIKEESQYKQNLI-NDLMNKLDESNILK 294
+EE ++NL +L LDE + L+
Sbjct: 362 SFQEEMVKEKNLFEEELKQTLDELDKLQ 389
>sp|P49454|CENPF_HUMAN CENP-F kinetochore protein (Centromere protein F) (Mitosin) (AH
antigen)
Length = 3210
Score = 35.0 bits (79), Expect = 0.100
Identities = 27/96 (28%), Positives = 46/96 (47%)
Frame = +1
Query: 7 RIDINAMRVHLNNENYSHSALLMDSMQNMKNEIDCLKENFHLKEVNENSLKIGNDRLQQN 186
R +I ++ L+ H ALL+D+ + + EI +E KE +S K+ D L+ +
Sbjct: 2789 REEIAEYQLRLHEAEKKHQALLLDTNKQYEVEIQTYREKLTSKEECLSSQKLEIDLLKSS 2848
Query: 187 IESLHQKIDEIKEESQYKQNLINDLMNKLDESNILK 294
E L+ + +K +Q + L M+ L N LK
Sbjct: 2849 KEELN---NSLKATTQILEELKKTKMDNLKYVNQLK 2881
Score = 28.5 bits (62), Expect = 9.3
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Frame = +1
Query: 37 LNNENYSHSALLMDSMQNMKNEIDCLKENFHLKEVNENSLKIGNDRLQQNIESLHQKI-- 210
L+ E A L +Q KN + L+ + L +L+ N+E QK+
Sbjct: 410 LDQECIQMKARLTQELQQAKNMHNVLQAEL-------DKLTSVKQQLENNLEEFKQKLCR 462
Query: 211 -DEIKEESQYKQNLINDLMNKL-DESNILKS 297
++ + SQ K+N + M ++ E+N+LKS
Sbjct: 463 AEQAFQASQIKENELRRSMEEMKKENNLLKS 493
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
Length = 1790
Score = 35.0 bits (79), Expect = 0.100
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Frame = +1
Query: 16 INAMRVHLNNENYSHSALLMDSMQNMKNEIDCLKE-----NFHLKEVN--ENSLKIGNDR 174
+N L +N ++ A L++S++++++E +KE NF KEV+ E+ LK D+
Sbjct: 1228 LNLQIKELKKKNETNEASLLESIKSVESETVKIKELQDECNFKEKEVSELEDKLKASEDK 1287
Query: 175 LQQNIESLHQKIDEIKEESQYKQNLINDLMNKL 273
+ +E L ++ ++IKEE K + + K+
Sbjct: 1288 NSKYLE-LQKESEKIKEELDAKTTELKIQLEKI 1319
Score = 32.3 bits (72), Expect = 0.65
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 46 ENYSHSALLMDSMQNMKNEIDCLKENFHLK----EVNENSLKIGNDRLQQNIESLHQKID 213
E+ + S++ + ++QN + + KENF ++ E N LK L+Q E + K D
Sbjct: 987 ESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKSD 1046
Query: 214 EIKEESQYKQNLINDLMNKLDESN 285
K+E + + +L+ + + +N
Sbjct: 1047 SSKDEYESQISLLKEKLETATTAN 1070
>sp|P47037|SMC3_YEAST Structural maintenance of chromosome 3 (DA-box protein SMC3)
Length = 1230
Score = 35.0 bits (79), Expect = 0.100
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +1
Query: 34 HLNNENYSHSALL--MDSMQNMKNEIDCLKENFHLKEVNENSLKIGNDR--LQQNIESLH 201
+LN H +L +D ++N N+ID + +VN N K+ NDR + NIE
Sbjct: 690 NLNESRSQHKKILEELDFVRNELNDIDT-----KIDQVNGNIRKVSNDRESVLTNIEVYR 744
Query: 202 QKIDEIKEESQYKQNLINDLMNKLDESN 285
++ K E + +N ++ KL++ N
Sbjct: 745 TSLNTKKNEKLILEESLNAIILKLEKLN 772
>sp|Q8C9S4|CJ118_MOUSE Protein C10orf118 homolog (Oocyte-testis gene 1 protein)
Length = 917
Score = 34.7 bits (78), Expect = 0.13
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Frame = +1
Query: 73 MDSMQNMKNEIDCLKENFHLKE---------VNENSLKIGN--------DRLQQNIESLH 201
MD ++ ++ + CL++ E +N +I N D+L + ++S
Sbjct: 514 MDELRTLRTKAKCLEDERLRTEDELSKYREIINRQKSEIQNLLDKVKITDQLHEQLQSGK 573
Query: 202 QKIDEIKEESQYKQNLINDLMNKLDES 282
Q+I+ +KEE + +LINDL ++ S
Sbjct: 574 QEIEHLKEEMESLNSLINDLQKDIEGS 600
>sp|Q92351|PCP1_SCHPO Spindle pole body protein pcp1
Length = 1208
Score = 34.7 bits (78), Expect = 0.13
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 43 NENYSHSALLMDSMQNMKNEIDCLKENFHLKEVNENSLKIGNDRLQQNIESLHQKIDEIK 222
NE + +M ++++ E D L+ E + NSL++ L IESL + EI
Sbjct: 417 NEEGKNFEDIMLQFRSLEEERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREID 476
Query: 223 EESQYKQNLINDLMNK-LDESNI-LKSIT 303
EE + + L + +K L E+NI L+ +T
Sbjct: 477 EEKNHLRLLASKNSDKALAETNIRLQEVT 505
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.312 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,366,352
Number of Sequences: 369166
Number of extensions: 667732
Number of successful extensions: 2474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2459
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)