Planaria EST Database


DrC_01707

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01707
         (719 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P81121|SP1_HORSE  Seminal plasma protein HSP-1                  44   6e-04
sp|P80964|PB1_PIG  Seminal plasma protein pB1 precursor (pAI...    43   7e-04
sp|P81019|SFP4_BOVIN  Seminal plasma protein BSP-30 kDa prec...    42   0.002
sp|P04557|SFP3_BOVIN  Seminal plasma protein A3 precursor (B...    41   0.004
sp|Q90611|MMP2_CHICK  72 kDa type IV collagenase precursor (...    40   0.005
sp|Q07113|MPRI_MOUSE  Cation-independent mannose-6-phosphate...    40   0.006
sp|P33434|MMP2_MOUSE  72 kDa type IV collagenase precursor (...    39   0.014
sp|P33436|MMP2_RAT  72 kDa type IV collagenase precursor (72...    39   0.014
sp|P08253|MMP2_HUMAN  72 kDa type IV collagenase precursor (...    38   0.031
sp|P08169|MPRI_BOVIN  Cation-independent mannose-6-phosphate...    38   0.031
>sp|P81121|SP1_HORSE Seminal plasma protein HSP-1
          Length = 120

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +2

Query: 56  ECTFPFIYKGLLFEDCTDANADFLWCSPTKEYSGTSIPCSSIE 184
           +C FPF Y+G  + DCT  ++ + WCS T  YSG+   C++ +
Sbjct: 33  KCVFPFNYRGYRYYDCTRTDSFYRWCSLTGTYSGSWKYCAATD 75

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 56  ECTFPFIYKGLLFEDCTDANADF--LWCSPTKEY 151
           +C FPF+Y+G  ++ CT   + F   WCS T  Y
Sbjct: 78  KCAFPFVYRGQTYDRCTTDGSLFRISWCSVTPNY 111
>sp|P80964|PB1_PIG Seminal plasma protein pB1 precursor (pAIF-1) (DQH protein)
          Length = 130

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +2

Query: 56  ECTFPFIYKGLLFEDCTDANADFLWCSPTKEY 151
           +C FPFIYKG L+ DCT  ++ + WCS T  Y
Sbjct: 43  KCVFPFIYKGNLYFDCTLHDSTYYWCSVTTYY 74
>sp|P81019|SFP4_BOVIN Seminal plasma protein BSP-30 kDa precursor (BSP-30K)
          Length = 183

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 59  CTFPFIYKGLLFEDCTDANADFLWCSPTKEYSGTSIPCSSIEDEQ 193
           C FPF YKG  +  CT  N+  LWCS   EY G    C+  ++ +
Sbjct: 97  CAFPFTYKGKKYYMCTRKNSVLLWCSLDTEYQGNWKFCTERDEPE 141

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 29  FSTKAGKPKECTFPFIYKGLLFEDCTDANADF--LWCSPTKEY 151
           F T+  +P EC FPFIY+   +E CT  ++ F   WCS T  Y
Sbjct: 133 FCTERDEP-ECVFPFIYRKKSYESCTRVHSFFWRRWCSLTSNY 174
>sp|P04557|SFP3_BOVIN Seminal plasma protein A3 precursor (BSP-A3)
          Length = 140

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 47  KPKECTFPFIYKGLLFEDCTDANADFLWCSPTKEYSG 157
           K  +C FPFIY    + DCT   + FLWCS   +Y+G
Sbjct: 50  KDNKCVFPFIYGNKKYFDCTLHGSLFLWCSLDADYTG 86

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
 Frame = +2

Query: 8   LLLSCVIFSTKAGKPKECT--------FPFIYKGLLFEDCTDANADFL--WCSPTKEY 151
           L L C + +   G+ K CT        FPFIY+G  ++ C    + F+  WCS +  Y
Sbjct: 74  LFLWCSLDADYTGRWKYCTKNDYAKCVFPFIYEGKSYDTCIIIGSTFMNYWCSLSSNY 131
>sp|Q90611|MMP2_CHICK 72 kDa type IV collagenase precursor (72 kDa gelatinase) (Matrix
           metalloproteinase-2) (MMP-2) (Gelatinase A)
          Length = 663

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 59  CTFPFIYKGLLFEDCTDA--NADFLWCSPTKEY 151
           C FPF + G  +  CTDA  N  FLWCS TK++
Sbjct: 230 CKFPFWFNGKEYNSCTDAGRNDGFLWCSTTKDF 262

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +2

Query: 59  CTFPFIYKGLLFEDCTDA--NADFLWCSPTKEYSGTSIPCSSIEDEQR--LKRDNYYQLF 226
           C FPFI+ G  ++ CT A  N   LWC+ T          SS +D+++     D  Y LF
Sbjct: 346 CVFPFIFLGNKYDSCTSAGRNDGKLWCAST----------SSYDDDRKWGFCPDQGYSLF 395

Query: 227 KVLEEQEAHIKKLEASQE 280
            V   +  H   LE S++
Sbjct: 396 LVAAHEFGHAMGLEHSED 413

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 44  GKPKECTFPFIYKGLLFEDC-TDANAD-FLWCSPTKEY 151
           G  + C FPF ++G  ++ C T+   D + WC  T++Y
Sbjct: 283 GDGQPCKFPFKFQGQSYDQCTTEGRTDGYRWCGTTEDY 320
>sp|Q07113|MPRI_MOUSE Cation-independent mannose-6-phosphate receptor precursor (CI Man-6-P
            receptor) (CI-MPR) (M6PR) (Insulin-like growth factor II
            receptor) (300 kDa mannose 6-phosphate receptor) (MPR
            300) (MPR300)
          Length = 2483

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +2

Query: 35   TKAGKPKECTFPFIYKGLLFEDCTDANADFLWCSPTKEY 151
            T  G+P  C FPFIYKG  +++C       LWCS T  Y
Sbjct: 1890 TDDGEP--CVFPFIYKGKSYDECVLEGRAKLWCSKTANY 1926
>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase precursor (72 kDa gelatinase) (Matrix
           metalloproteinase-2) (MMP-2) (Gelatinase A)
          Length = 662

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +2

Query: 59  CTFPFIYKGLLFEDCTDA--NADFLWCSPTKEYSGTSIPCSSIEDEQR--LKRDNYYQLF 226
           C FPF + G  +E CT A  N   +WC+ T  Y          +D+++     D  Y LF
Sbjct: 349 CVFPFTFLGNKYESCTSAGRNDGKVWCATTTNY----------DDDRKWGFCPDQGYSLF 398

Query: 227 KVLEEQEAHIKKLEASQE 280
            V   +  H   LE SQ+
Sbjct: 399 LVAAHEFGHAMGLEHSQD 416

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 59  CTFPFIYKGLLFEDCTDANAD--FLWCSPTKEY 151
           C FPF++ G  +  CTD      FLWCS T  +
Sbjct: 233 CKFPFLFNGREYSSCTDTGRSDGFLWCSTTYNF 265

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 44  GKPKECTFPFIYKGLLFEDC-TDANAD-FLWCSPTKEY 151
           G+P  C FPF ++G  +  C T+   D + WC  T++Y
Sbjct: 288 GQP--CKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDY 323
>sp|P33436|MMP2_RAT 72 kDa type IV collagenase precursor (72 kDa gelatinase) (Matrix
           metalloproteinase-2) (MMP-2) (Gelatinase A)
          Length = 662

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = +2

Query: 59  CTFPFIYKGLLFEDCTDA--NADFLWCSPTKEYSGTSIPCSSIEDEQR--LKRDNYYQLF 226
           C FPF + G  +E CT A  N   +WC+ T  Y          +D+++     D  Y LF
Sbjct: 349 CVFPFTFLGNKYESCTSAGRNDGKVWCATTTNY----------DDDRKWGFCPDQGYSLF 398

Query: 227 KVLEEQEAHIKKLEASQE 280
            V   +  H   LE SQ+
Sbjct: 399 LVAAHEFGHAMGLEHSQD 416

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 59  CTFPFIYKGLLFEDCTDANAD--FLWCSPTKEY 151
           C FPF++ G  +  CTD      FLWCS T  +
Sbjct: 233 CKFPFLFNGREYSSCTDTGRSDGFLWCSTTYNF 265

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 44  GKPKECTFPFIYKGLLFEDC-TDANAD-FLWCSPTKEY 151
           G+P  C FPF ++G  +  C T+   D + WC  T++Y
Sbjct: 288 GQP--CKFPFRFQGTSYNSCTTEGRTDGYRWCGTTEDY 323
>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase precursor (72 kDa gelatinase) (Matrix
           metalloproteinase-2) (MMP-2) (Gelatinase A) (TBE-1)
          Length = 660

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +2

Query: 59  CTFPFIYKGLLFEDCTDANAD--FLWCSPTKEYSGTSIPCSSIEDEQR--LKRDNYYQLF 226
           C FPF + G  +E CT A      +WC+ T  Y          +D+++     D  Y LF
Sbjct: 349 CVFPFTFLGNKYESCTSAGRSDGKMWCATTANY----------DDDRKWGFCPDQGYSLF 398

Query: 227 KVLEEQEAHIKKLEASQE 280
            V   +  H   LE SQ+
Sbjct: 399 LVAAHEFGHAMGLEHSQD 416

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 59  CTFPFIYKGLLFEDCTDANAD--FLWCSPTKEY 151
           C FPF++ G  +  CTD      FLWCS T  +
Sbjct: 233 CKFPFLFNGKEYNSCTDTGRSDGFLWCSTTYNF 265

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 44  GKPKECTFPFIYKGLLFEDC-TDANAD-FLWCSPTKEY 151
           G+P  C FPF ++G  ++ C T+   D + WC  T++Y
Sbjct: 288 GQP--CKFPFRFQGTSYDSCTTEGRTDGYRWCGTTEDY 323
>sp|P08169|MPRI_BOVIN Cation-independent mannose-6-phosphate receptor precursor (CI Man-6-P
            receptor) (CI-MPR) (M6PR) (Insulin-like growth factor II
            receptor) (300 kDa mannose 6-phosphate receptor) (MPR
            300) (MPR300)
          Length = 2499

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 35   TKAGKPKECTFPFIYKGLLFEDCTDANADFLWCSPTKEY 151
            T+ G+P  C FPF++ G  +E+C   +   LWC+ T  Y
Sbjct: 1906 TEDGEP--CVFPFVFNGKSYEECVVESRARLWCATTANY 1942
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,364,669
Number of Sequences: 369166
Number of extensions: 1495502
Number of successful extensions: 4194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4189
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)