Planaria EST Database


DrC_01702

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01702
         (771 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53866|YNW4_YEAST  Hypothetical 86.9 kDa protein in URE2-...    31   4.3  
sp|Q645Z3|T2R55_GORGO  Taste receptor type 2 member 55 (T2R55)     31   4.3  
sp|Q5Y4Z2|T2R55_PANPA  Taste receptor type 2 member 55 (T2R55)     30   7.3  
sp|Q646B8|T2R55_PANTR  Taste receptor type 2 member 55 (T2R55)     30   7.3  
sp|P32641|RAD24_YEAST  Checkpoint protein RAD24                    30   9.5  
>sp|P53866|YNW4_YEAST Hypothetical 86.9 kDa protein in URE2-SSU72 intergenic region
          Length = 767

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 481 SDTEY*GNEVTEEEDDGSRGTLSRDH 404
           SD EY  NE +E EDD S+ + S DH
Sbjct: 168 SDVEYINNEDSENEDDDSQNSPSTDH 193
>sp|Q645Z3|T2R55_GORGO Taste receptor type 2 member 55 (T2R55)
          Length = 299

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 589 IFLTSSLS*TINSFLFFYLWNLTDFKILIFLITFFRSIHIFIICM 723
           +F+    S  + +++FF LWN    K ++  +  F S H FI+ +
Sbjct: 242 LFIVHFFSLQVANWIFFMLWNNKYIKFVMLALNAFPSCHSFILIL 286
>sp|Q5Y4Z2|T2R55_PANPA Taste receptor type 2 member 55 (T2R55)
          Length = 314

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 589 IFLTSSLS*TINSFLFFYLWNLTDFKILIFLITFFRSIHIFIICM 723
           +F+    S  + +++FF LWN    K  +  +  F S H FI+ +
Sbjct: 242 LFIVHFFSLQVANWIFFMLWNNKYIKFAMLALNAFPSCHSFILIL 286
>sp|Q646B8|T2R55_PANTR Taste receptor type 2 member 55 (T2R55)
          Length = 314

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 589 IFLTSSLS*TINSFLFFYLWNLTDFKILIFLITFFRSIHIFIICM 723
           +F+    S  + +++FF LWN    K  +  +  F S H FI+ +
Sbjct: 242 LFIVHFFSLQVANWIFFMLWNNKYIKFAMLALNAFPSCHSFILIL 286
>sp|P32641|RAD24_YEAST Checkpoint protein RAD24
          Length = 659

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -1

Query: 600 SEKNVYYKEIFLEILCSKLIFNPVEKNL*FEIHLELIFPFQIRNIEVMKLLKKRMMVVEV 421
           S + +  KEI +     ++ FNP+   L  + HL+ I    ++ ++      KR  V++ 
Sbjct: 245 SAETIMNKEILMHPRLKRIKFNPINSTL-LKKHLKFICVQNMKMLKEKNKWNKRQEVIDY 303

Query: 420 LYQET 406
           + QET
Sbjct: 304 IAQET 308
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,415,991
Number of Sequences: 369166
Number of extensions: 1160273
Number of successful extensions: 2868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2866
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)