Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_O13
(771 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53866|YNW4_YEAST Hypothetical 86.9 kDa protein in URE2-... 31 4.3
sp|Q645Z3|T2R55_GORGO Taste receptor type 2 member 55 (T2R55) 31 4.3
sp|Q5Y4Z2|T2R55_PANPA Taste receptor type 2 member 55 (T2R55) 30 7.3
sp|Q646B8|T2R55_PANTR Taste receptor type 2 member 55 (T2R55) 30 7.3
sp|P32641|RAD24_YEAST Checkpoint protein RAD24 30 9.5
>sp|P53866|YNW4_YEAST Hypothetical 86.9 kDa protein in URE2-SSU72 intergenic region
Length = 767
Score = 30.8 bits (68), Expect = 4.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 481 SDTEY*GNEVTEEEDDGSRGTLSRDH 404
SD EY NE +E EDD S+ + S DH
Sbjct: 168 SDVEYINNEDSENEDDDSQNSPSTDH 193
>sp|Q645Z3|T2R55_GORGO Taste receptor type 2 member 55 (T2R55)
Length = 299
Score = 30.8 bits (68), Expect = 4.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 589 IFLTSSLS*TINSFLFFYLWNLTDFKILIFLITFFRSIHIFIICM 723
+F+ S + +++FF LWN K ++ + F S H FI+ +
Sbjct: 242 LFIVHFFSLQVANWIFFMLWNNKYIKFVMLALNAFPSCHSFILIL 286
>sp|Q5Y4Z2|T2R55_PANPA Taste receptor type 2 member 55 (T2R55)
Length = 314
Score = 30.0 bits (66), Expect = 7.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 589 IFLTSSLS*TINSFLFFYLWNLTDFKILIFLITFFRSIHIFIICM 723
+F+ S + +++FF LWN K + + F S H FI+ +
Sbjct: 242 LFIVHFFSLQVANWIFFMLWNNKYIKFAMLALNAFPSCHSFILIL 286
>sp|Q646B8|T2R55_PANTR Taste receptor type 2 member 55 (T2R55)
Length = 314
Score = 30.0 bits (66), Expect = 7.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 589 IFLTSSLS*TINSFLFFYLWNLTDFKILIFLITFFRSIHIFIICM 723
+F+ S + +++FF LWN K + + F S H FI+ +
Sbjct: 242 LFIVHFFSLQVANWIFFMLWNNKYIKFAMLALNAFPSCHSFILIL 286
>sp|P32641|RAD24_YEAST Checkpoint protein RAD24
Length = 659
Score = 29.6 bits (65), Expect = 9.5
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -1
Query: 600 SEKNVYYKEIFLEILCSKLIFNPVEKNL*FEIHLELIFPFQIRNIEVMKLLKKRMMVVEV 421
S + + KEI + ++ FNP+ L + HL+ I ++ ++ KR V++
Sbjct: 245 SAETIMNKEILMHPRLKRIKFNPINSTL-LKKHLKFICVQNMKMLKEKNKWNKRQEVIDY 303
Query: 420 LYQET 406
+ QET
Sbjct: 304 IAQET 308
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,415,991
Number of Sequences: 369166
Number of extensions: 1160273
Number of successful extensions: 2868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2866
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)