Planaria EST Database


DrC_01697

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01697
         (846 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12146|PSF3_YEAST  DNA replication complex GINS protein P...    36   0.12 
sp|O70173|P3C2G_RAT  Phosphatidylinositol-4-phosphate 3-kina...    32   2.9  
sp|O75747|P3C2G_HUMAN  Phosphatidylinositol-4-phosphate 3-ki...    30   6.4  
>sp|Q12146|PSF3_YEAST DNA replication complex GINS protein PSF1 (Partner of Sld five 3)
          Length = 194

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 21/122 (17%), Positives = 60/122 (49%)
 Frame = +1

Query: 403 LF*SKYRNIYLADPAEHNVRKWSAYFYNVCWHYLTMKMPEGITFLNANDISNSVSKLLQE 582
           +F +K  N    DP   ++   +++F+++   ++ +         +  +++N VS+LL +
Sbjct: 79  MFSTKVMNAIKTDPVALDLHSINSHFFSLAIKWIML--------FSEKELANVVSELLLQ 130

Query: 583 RLNFLISNAVYANENVWXXXXXXXXXXXXXXXXXFVIRMDELERAIFQQALQARTNTDKW 762
           R   L  +A   + ++                  F+++++E+E+ I++++ ++  +T +W
Sbjct: 131 RAQELNHHASSLSIDLNADSTGKNSANTNIATSTFLLKLEEMEKEIYKKSHESYKDTKRW 190

Query: 763 LF 768
           +F
Sbjct: 191 MF 192
>sp|O70173|P3C2G_RAT Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing gamma
            polypeptide (Phosphoinositide 3-Kinase-C2-gamma)
            (PtdIns-3-kinase C2 gamma) (PI3K-C2gamma)
          Length = 1505

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 484  NVCWHYLTMKMPEGITFLNANDISNSVSKLLQE----RLNFLISNAVYANENVW 633
            + C ++ +  +P  ITF+NAN +  ++S + +     R + L+   +   +NVW
Sbjct: 950  DACSYFTSNALPLKITFINANPMGKNISVIFKAGDDLRQDMLVLQIIQVMDNVW 1003
>sp|O75747|P3C2G_HUMAN Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing gamma
            polypeptide (Phosphoinositide 3-Kinase-C2-gamma)
            (PtdIns-3-kinase C2 gamma) (PI3K-C2gamma)
          Length = 1448

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 481  YNVCWHYLTMKMPEGITFLNANDISNSVSKLLQE----RLNFLISNAVYANENVW 633
            ++ C ++ +  +P  ITF+NAN +  ++S + +     R + L+   +   +N+W
Sbjct: 889  HDACSYFTSNALPLKITFINANLMGKNISIIFKAGDDLRQDMLVLQLIQVMDNIW 943
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,239,197
Number of Sequences: 369166
Number of extensions: 1774346
Number of successful extensions: 3197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3197
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)