Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_N21
(846 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12146|PSF3_YEAST DNA replication complex GINS protein P... 36 0.12
sp|O70173|P3C2G_RAT Phosphatidylinositol-4-phosphate 3-kina... 32 2.9
sp|O75747|P3C2G_HUMAN Phosphatidylinositol-4-phosphate 3-ki... 30 6.4
>sp|Q12146|PSF3_YEAST DNA replication complex GINS protein PSF1 (Partner of Sld five 3)
Length = 194
Score = 36.2 bits (82), Expect = 0.12
Identities = 21/122 (17%), Positives = 60/122 (49%)
Frame = +1
Query: 403 LF*SKYRNIYLADPAEHNVRKWSAYFYNVCWHYLTMKMPEGITFLNANDISNSVSKLLQE 582
+F +K N DP ++ +++F+++ ++ + + +++N VS+LL +
Sbjct: 79 MFSTKVMNAIKTDPVALDLHSINSHFFSLAIKWIML--------FSEKELANVVSELLLQ 130
Query: 583 RLNFLISNAVYANENVWXXXXXXXXXXXXXXXXXFVIRMDELERAIFQQALQARTNTDKW 762
R L +A + ++ F+++++E+E+ I++++ ++ +T +W
Sbjct: 131 RAQELNHHASSLSIDLNADSTGKNSANTNIATSTFLLKLEEMEKEIYKKSHESYKDTKRW 190
Query: 763 LF 768
+F
Sbjct: 191 MF 192
>sp|O70173|P3C2G_RAT Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing gamma
polypeptide (Phosphoinositide 3-Kinase-C2-gamma)
(PtdIns-3-kinase C2 gamma) (PI3K-C2gamma)
Length = 1505
Score = 31.6 bits (70), Expect = 2.9
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 484 NVCWHYLTMKMPEGITFLNANDISNSVSKLLQE----RLNFLISNAVYANENVW 633
+ C ++ + +P ITF+NAN + ++S + + R + L+ + +NVW
Sbjct: 950 DACSYFTSNALPLKITFINANPMGKNISVIFKAGDDLRQDMLVLQIIQVMDNVW 1003
>sp|O75747|P3C2G_HUMAN Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing gamma
polypeptide (Phosphoinositide 3-Kinase-C2-gamma)
(PtdIns-3-kinase C2 gamma) (PI3K-C2gamma)
Length = 1448
Score = 30.4 bits (67), Expect = 6.4
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +1
Query: 481 YNVCWHYLTMKMPEGITFLNANDISNSVSKLLQE----RLNFLISNAVYANENVW 633
++ C ++ + +P ITF+NAN + ++S + + R + L+ + +N+W
Sbjct: 889 HDACSYFTSNALPLKITFINANLMGKNISIIFKAGDDLRQDMLVLQLIQVMDNIW 943
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,239,197
Number of Sequences: 369166
Number of extensions: 1774346
Number of successful extensions: 3197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3197
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)