Planaria EST Database


DrC_01685

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01685
         (217 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86SZ2|TPC6B_HUMAN  Trafficking protein particle complex ...    42   3e-04
sp|Q9D289|TPC6B_MOUSE  Trafficking protein particle complex ...    42   3e-04
sp|Q78XR0|TPC6A_MOUSE  Trafficking protein particle complex ...    35   0.053
sp|Q09784|YA95_SCHPO  Hypothetical protein C13G6.05c in chro...    30   1.7  
sp|O61270|GELS_HALRO  Gelsolin, cytoplasmic (Actin-depolymer...    28   8.5  
>sp|Q86SZ2|TPC6B_HUMAN Trafficking protein particle complex subunit 6B
          Length = 158

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = -1

Query: 196 CGIIQGALANLGIISQVNAEVQNIPSCKF 110
           CG+I+G L+NLGI S V AEV ++P+CKF
Sbjct: 123 CGLIRGGLSNLGIKSIVTAEVSSMPACKF 151
>sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex subunit 6B
          Length = 158

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = -1

Query: 196 CGIIQGALANLGIISQVNAEVQNIPSCKF 110
           CG+I+G L+NLGI S V AEV ++P+CKF
Sbjct: 123 CGLIRGGLSNLGIKSIVTAEVSSMPACKF 151
>sp|Q78XR0|TPC6A_MOUSE Trafficking protein particle complex subunit 6A
          Length = 159

 Score = 35.0 bits (79), Expect = 0.053
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -1

Query: 196 CGIIQGALANLGIISQVNAEVQNIPSCKF 110
           CG++ GAL  LG  S V A V ++P+CKF
Sbjct: 124 CGLLCGALHTLGFQSLVTASVASLPACKF 152
>sp|Q09784|YA95_SCHPO Hypothetical protein C13G6.05c in chromosome I
          Length = 245

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 199 PCGIIQGALANLGIISQVNAEVQNIPSCKFTFK 101
           P G I+G +   G  +QV A+  N+P+C F  K
Sbjct: 131 PSGFIRGVVYTFGYSAQVIAQCPNLPTCIFHVK 163
>sp|O61270|GELS_HALRO Gelsolin, cytoplasmic (Actin-depolymerizing factor) (ADF) (Ascidian
           gelsolin)
          Length = 715

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 132 RTFHLANLLSNYVLPEYEANYIQTNLS 52
           R F ++N   N++  E  +NY+Q++L+
Sbjct: 614 RLFEMSNATGNFIAEEINSNYVQSDLN 640
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,396,457
Number of Sequences: 369166
Number of extensions: 356132
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)