Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_L03
(217 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86SZ2|TPC6B_HUMAN Trafficking protein particle complex ... 42 3e-04
sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex ... 42 3e-04
sp|Q78XR0|TPC6A_MOUSE Trafficking protein particle complex ... 35 0.053
sp|Q09784|YA95_SCHPO Hypothetical protein C13G6.05c in chro... 30 1.7
sp|O61270|GELS_HALRO Gelsolin, cytoplasmic (Actin-depolymer... 28 8.5
>sp|Q86SZ2|TPC6B_HUMAN Trafficking protein particle complex subunit 6B
Length = 158
Score = 42.4 bits (98), Expect = 3e-04
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -1
Query: 196 CGIIQGALANLGIISQVNAEVQNIPSCKF 110
CG+I+G L+NLGI S V AEV ++P+CKF
Sbjct: 123 CGLIRGGLSNLGIKSIVTAEVSSMPACKF 151
>sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex subunit 6B
Length = 158
Score = 42.4 bits (98), Expect = 3e-04
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -1
Query: 196 CGIIQGALANLGIISQVNAEVQNIPSCKF 110
CG+I+G L+NLGI S V AEV ++P+CKF
Sbjct: 123 CGLIRGGLSNLGIKSIVTAEVSSMPACKF 151
>sp|Q78XR0|TPC6A_MOUSE Trafficking protein particle complex subunit 6A
Length = 159
Score = 35.0 bits (79), Expect = 0.053
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -1
Query: 196 CGIIQGALANLGIISQVNAEVQNIPSCKF 110
CG++ GAL LG S V A V ++P+CKF
Sbjct: 124 CGLLCGALHTLGFQSLVTASVASLPACKF 152
>sp|Q09784|YA95_SCHPO Hypothetical protein C13G6.05c in chromosome I
Length = 245
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 199 PCGIIQGALANLGIISQVNAEVQNIPSCKFTFK 101
P G I+G + G +QV A+ N+P+C F K
Sbjct: 131 PSGFIRGVVYTFGYSAQVIAQCPNLPTCIFHVK 163
>sp|O61270|GELS_HALRO Gelsolin, cytoplasmic (Actin-depolymerizing factor) (ADF) (Ascidian
gelsolin)
Length = 715
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 132 RTFHLANLLSNYVLPEYEANYIQTNLS 52
R F ++N N++ E +NY+Q++L+
Sbjct: 614 RLFEMSNATGNFIAEEINSNYVQSDLN 640
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,396,457
Number of Sequences: 369166
Number of extensions: 356132
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)