Planaria EST Database


DrC_01681

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01681
         (459 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42932|TCPQ_MOUSE  T-complex protein 1, theta subunit (TC...   100   1e-21
sp|P50990|TCPQ_HUMAN  T-complex protein 1, theta subunit (TC...   100   2e-21
sp|P78921|TCPQ_SCHPO  Probable T-complex protein 1, theta su...    73   3e-13
sp|P47079|TCPQ_YEAST  T-complex protein 1, theta subunit (TC...    67   1e-11
sp|P47828|TCPQ_CANAL  T-complex protein 1, theta subunit (TC...    65   9e-11
sp|Q9YDK6|THSA_AERPE  Thermosome alpha subunit (Thermosome s...    62   8e-10
sp|P48425|THSB_THEAC  Thermosome beta subunit (Thermosome su...    60   3e-09
sp|P47208|TCPD_CAEEL  T-complex protein 1, delta subunit (TC...    55   1e-07
sp|Q9HHA2|THS3_HALVO  Thermosome subunit 3 (Heat shock prote...    55   1e-07
sp|O93624|THS_METTL  Thermosome subunit (Chaperonin subunit)       54   2e-07
>sp|P42932|TCPQ_MOUSE T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
          Length = 548

 Score =  100 bits (250), Expect = 1e-21
 Identities = 45/115 (39%), Positives = 80/115 (69%)
 Frame = +2

Query: 2   CSDLRQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKL 181
           C  L QYAI++F ++F+ + +AL +N+G+KA + ++ L+ +H +GN+  GL    +   +
Sbjct: 430 CPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGLDIEAEVPAV 489

Query: 182 GNVVDANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPNE 346
            ++++A+I D Y  ++WAIK A++AA+++L+VDQ+IMA+PAGG   PK P    +
Sbjct: 490 KDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGG---PKPPSGKKD 541
>sp|P50990|TCPQ_HUMAN T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
 sp|Q5RAP1|TCPQ_PONPY T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
          Length = 548

 Score =  100 bits (248), Expect = 2e-21
 Identities = 45/115 (39%), Positives = 79/115 (68%)
 Frame = +2

Query: 2   CSDLRQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKL 181
           C  L QYAI++F ++F+ + +AL +N+G+KA + ++ L+ +H +GN+  GL    +   +
Sbjct: 430 CPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAV 489

Query: 182 GNVVDANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPNE 346
            ++++A I D Y  ++WAIK A++AA+++L+VDQ+IMA+PAGG   PK P    +
Sbjct: 490 KDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGG---PKPPSGKKD 541
>sp|P78921|TCPQ_SCHPO Probable T-complex protein 1, theta subunit (TCP-1-theta)
           (CCT-theta)
          Length = 546

 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 38/110 (34%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
 Frame = +2

Query: 17  QYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGN-QYHGLICNDDSSKLGNVV 193
           Q+AI+Q+G++F++V + + +N GL   D ++ L+  H++ N +  G+    ++    +  
Sbjct: 435 QHAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAK 494

Query: 194 DANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPN 343
           +A IFD+   +  AI+ A++  +++L VDQV+M++PAGG   PK PG PN
Sbjct: 495 EAGIFDVLLAKKSAIRLATETVLTVLNVDQVVMSKPAGG---PKPPG-PN 540
>sp|P47079|TCPQ_YEAST T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
          Length = 568

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 9/120 (7%)
 Frame = +2

Query: 11  LRQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHN--------QGNQYHGLICND 166
           L Q AI+QF  +F++V + L +  GL   + + +L+  HN          + Y G+  + 
Sbjct: 444 LLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDG 503

Query: 167 DSSK-LGNVVDANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPN 343
           +S + + ++ + NI+D+ + + +AI  A++AA ++L +DQ+IMA+ AGG   P+ P   N
Sbjct: 504 ESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGPRAPQGPRPGN 563
>sp|P47828|TCPQ_CANAL T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
          Length = 540

 Score = 64.7 bits (156), Expect = 9e-11
 Identities = 36/111 (32%), Positives = 59/111 (53%)
 Frame = +2

Query: 11  LRQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKLGNV 190
           L Q AI+ F ++F+++ + L + +G  + + ++ LH  H +       I  D     G V
Sbjct: 429 LLQLAIKSFAKAFEVIPRVLAETSGHDSSEILSKLHAAHAEDTGLRAGIDIDS----GEV 484

Query: 191 VDANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPN 343
            D  + D+ + +  AI  A DA  +IL +DQ+IMA+ AGG   P+QP   N
Sbjct: 485 ADTAVLDILATKKSAIDLAVDATNTILSIDQIIMAKRAGGPVMPQQPRPGN 535
>sp|Q9YDK6|THSA_AERPE Thermosome alpha subunit (Thermosome subunit 1) (Chaperonin alpha
           subunit)
          Length = 554

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 35/112 (31%), Positives = 62/112 (55%)
 Frame = +2

Query: 14  RQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKLGNVV 193
           +Q AI  + ++ + +   L ++ G+ A++A+  L  LH+QG ++ G+   +   +  ++ 
Sbjct: 435 QQLAIEAYAEALETIPTVLAESAGMDALEALLKLRSLHSQGYKFAGVNVLEGKIE-EDMT 493

Query: 194 DANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPNEE 349
             N+++   V+   IK AS+AAISILK+D VI A P     K  + G   EE
Sbjct: 494 KINVYEPVLVKKQVIKSASEAAISILKIDDVIAAAPPKKKEKKGKTGEEEEE 545
>sp|P48425|THSB_THEAC Thermosome beta subunit (Thermosome subunit 2) (Chaperonin beta
           subunit)
          Length = 543

 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 33/111 (29%), Positives = 63/111 (56%)
 Frame = +2

Query: 14  RQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKLGNVV 193
           +Q AI +F  + + + +AL +N GL  ID +  L   H +GN+ +G+  N  + ++ ++V
Sbjct: 431 QQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGI--NVFTGEIEDMV 488

Query: 194 DANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPNE 346
              + +   V   AI+ A++AAI IL++D VI  + +   + P + G+ +E
Sbjct: 489 KNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSSNPPKSGSSSE 539
>sp|P47208|TCPD_CAEEL T-complex protein 1, delta subunit (TCP-1-delta) (CCT-delta)
          Length = 540

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 32/93 (34%), Positives = 49/93 (52%)
 Frame = +2

Query: 17  QYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKLGNVVD 196
           QY  R F  + +L+   L +N GL  I  VT+L   H  GN  +G+  N     + ++V+
Sbjct: 448 QYCWRAFADALELIPYTLAENAGLSPIHTVTELRNNHANGNSSYGV--NVRKGYVTDMVE 505

Query: 197 ANIFDLYSVRHWAIKFASDAAISILKVDQVIMA 295
            ++     V   AIK AS+   SILK+D ++MA
Sbjct: 506 EDVVQPLLVTASAIKQASECVRSILKIDDIVMA 538
>sp|Q9HHA2|THS3_HALVO Thermosome subunit 3 (Heat shock protein CCT3)
          Length = 524

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 28/95 (29%), Positives = 56/95 (58%)
 Frame = +2

Query: 14  RQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKLGNVV 193
           +Q A+  +  + + + + L +NTG+  IDA+ DL   + +     G+I +  S ++G+ V
Sbjct: 431 KQLAVEAYADAVEALPRTLAENTGMDPIDALVDLRARY-ETEGLAGIISSGRSGEIGDPV 489

Query: 194 DANIFDLYSVRHWAIKFASDAAISILKVDQVIMAR 298
           +  + D  +V+  AI+ A++AA  I+++D VI A+
Sbjct: 490 ELGVIDPVAVKREAIESATEAATMIVRIDDVIAAK 524
>sp|O93624|THS_METTL Thermosome subunit (Chaperonin subunit)
          Length = 544

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
 Frame = +2

Query: 5   SDLRQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQ-YHGLICNDDSSKL 181
           S   Q A+R F  + ++V + L +N GL AI+ +  L   H +GN  Y+GL  N  +  +
Sbjct: 425 SGREQLAVRAFADALEVVPRTLAENAGLDAIEMLVKLRAKHAEGNNAYYGL--NVFTGDV 482

Query: 182 GNVVDANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGG 310
            N+ +  + +   V+  AI+ A++A   +L++D VI A    G
Sbjct: 483 ENMTENGVVEPLRVKTQAIQSATEATEMLLRIDDVIAAEKLSG 525
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,732,073
Number of Sequences: 369166
Number of extensions: 992416
Number of successful extensions: 2888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2877
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)