Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_K06
(459 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42932|TCPQ_MOUSE T-complex protein 1, theta subunit (TC... 100 1e-21
sp|P50990|TCPQ_HUMAN T-complex protein 1, theta subunit (TC... 100 2e-21
sp|P78921|TCPQ_SCHPO Probable T-complex protein 1, theta su... 73 3e-13
sp|P47079|TCPQ_YEAST T-complex protein 1, theta subunit (TC... 67 1e-11
sp|P47828|TCPQ_CANAL T-complex protein 1, theta subunit (TC... 65 9e-11
sp|Q9YDK6|THSA_AERPE Thermosome alpha subunit (Thermosome s... 62 8e-10
sp|P48425|THSB_THEAC Thermosome beta subunit (Thermosome su... 60 3e-09
sp|P47208|TCPD_CAEEL T-complex protein 1, delta subunit (TC... 55 1e-07
sp|Q9HHA2|THS3_HALVO Thermosome subunit 3 (Heat shock prote... 55 1e-07
sp|O93624|THS_METTL Thermosome subunit (Chaperonin subunit) 54 2e-07
>sp|P42932|TCPQ_MOUSE T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
Length = 548
Score = 100 bits (250), Expect = 1e-21
Identities = 45/115 (39%), Positives = 80/115 (69%)
Frame = +2
Query: 2 CSDLRQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKL 181
C L QYAI++F ++F+ + +AL +N+G+KA + ++ L+ +H +GN+ GL + +
Sbjct: 430 CPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGLDIEAEVPAV 489
Query: 182 GNVVDANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPNE 346
++++A+I D Y ++WAIK A++AA+++L+VDQ+IMA+PAGG PK P +
Sbjct: 490 KDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGG---PKPPSGKKD 541
>sp|P50990|TCPQ_HUMAN T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
sp|Q5RAP1|TCPQ_PONPY T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
Length = 548
Score = 100 bits (248), Expect = 2e-21
Identities = 45/115 (39%), Positives = 79/115 (68%)
Frame = +2
Query: 2 CSDLRQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKL 181
C L QYAI++F ++F+ + +AL +N+G+KA + ++ L+ +H +GN+ GL + +
Sbjct: 430 CPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAV 489
Query: 182 GNVVDANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPNE 346
++++A I D Y ++WAIK A++AA+++L+VDQ+IMA+PAGG PK P +
Sbjct: 490 KDMLEAGILDTYLGKYWAIKLATNAAVTVLRVDQIIMAKPAGG---PKPPSGKKD 541
>sp|P78921|TCPQ_SCHPO Probable T-complex protein 1, theta subunit (TCP-1-theta)
(CCT-theta)
Length = 546
Score = 73.2 bits (178), Expect = 3e-13
Identities = 38/110 (34%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = +2
Query: 17 QYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGN-QYHGLICNDDSSKLGNVV 193
Q+AI+Q+G++F++V + + +N GL D ++ L+ H++ N + G+ ++ +
Sbjct: 435 QHAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAK 494
Query: 194 DANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPN 343
+A IFD+ + AI+ A++ +++L VDQV+M++PAGG PK PG PN
Sbjct: 495 EAGIFDVLLAKKSAIRLATETVLTVLNVDQVVMSKPAGG---PKPPG-PN 540
>sp|P47079|TCPQ_YEAST T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
Length = 568
Score = 67.4 bits (163), Expect = 1e-11
Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 9/120 (7%)
Frame = +2
Query: 11 LRQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHN--------QGNQYHGLICND 166
L Q AI+QF +F++V + L + GL + + +L+ HN + Y G+ +
Sbjct: 444 LLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDG 503
Query: 167 DSSK-LGNVVDANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPN 343
+S + + ++ + NI+D+ + + +AI A++AA ++L +DQ+IMA+ AGG P+ P N
Sbjct: 504 ESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKKAGGPRAPQGPRPGN 563
>sp|P47828|TCPQ_CANAL T-complex protein 1, theta subunit (TCP-1-theta) (CCT-theta)
Length = 540
Score = 64.7 bits (156), Expect = 9e-11
Identities = 36/111 (32%), Positives = 59/111 (53%)
Frame = +2
Query: 11 LRQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKLGNV 190
L Q AI+ F ++F+++ + L + +G + + ++ LH H + I D G V
Sbjct: 429 LLQLAIKSFAKAFEVIPRVLAETSGHDSSEILSKLHAAHAEDTGLRAGIDIDS----GEV 484
Query: 191 VDANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPN 343
D + D+ + + AI A DA +IL +DQ+IMA+ AGG P+QP N
Sbjct: 485 ADTAVLDILATKKSAIDLAVDATNTILSIDQIIMAKRAGGPVMPQQPRPGN 535
>sp|Q9YDK6|THSA_AERPE Thermosome alpha subunit (Thermosome subunit 1) (Chaperonin alpha
subunit)
Length = 554
Score = 61.6 bits (148), Expect = 8e-10
Identities = 35/112 (31%), Positives = 62/112 (55%)
Frame = +2
Query: 14 RQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKLGNVV 193
+Q AI + ++ + + L ++ G+ A++A+ L LH+QG ++ G+ + + ++
Sbjct: 435 QQLAIEAYAEALETIPTVLAESAGMDALEALLKLRSLHSQGYKFAGVNVLEGKIE-EDMT 493
Query: 194 DANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPNEE 349
N+++ V+ IK AS+AAISILK+D VI A P K + G EE
Sbjct: 494 KINVYEPVLVKKQVIKSASEAAISILKIDDVIAAAPPKKKEKKGKTGEEEEE 545
>sp|P48425|THSB_THEAC Thermosome beta subunit (Thermosome subunit 2) (Chaperonin beta
subunit)
Length = 543
Score = 59.7 bits (143), Expect = 3e-09
Identities = 33/111 (29%), Positives = 63/111 (56%)
Frame = +2
Query: 14 RQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKLGNVV 193
+Q AI +F + + + +AL +N GL ID + L H +GN+ +G+ N + ++ ++V
Sbjct: 431 QQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGI--NVFTGEIEDMV 488
Query: 194 DANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGGVAKPKQPGAPNE 346
+ + V AI+ A++AAI IL++D VI + + + P + G+ +E
Sbjct: 489 KNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKSSSSSSNPPKSGSSSE 539
>sp|P47208|TCPD_CAEEL T-complex protein 1, delta subunit (TCP-1-delta) (CCT-delta)
Length = 540
Score = 54.7 bits (130), Expect = 1e-07
Identities = 32/93 (34%), Positives = 49/93 (52%)
Frame = +2
Query: 17 QYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKLGNVVD 196
QY R F + +L+ L +N GL I VT+L H GN +G+ N + ++V+
Sbjct: 448 QYCWRAFADALELIPYTLAENAGLSPIHTVTELRNNHANGNSSYGV--NVRKGYVTDMVE 505
Query: 197 ANIFDLYSVRHWAIKFASDAAISILKVDQVIMA 295
++ V AIK AS+ SILK+D ++MA
Sbjct: 506 EDVVQPLLVTASAIKQASECVRSILKIDDIVMA 538
>sp|Q9HHA2|THS3_HALVO Thermosome subunit 3 (Heat shock protein CCT3)
Length = 524
Score = 54.7 bits (130), Expect = 1e-07
Identities = 28/95 (29%), Positives = 56/95 (58%)
Frame = +2
Query: 14 RQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQYHGLICNDDSSKLGNVV 193
+Q A+ + + + + + L +NTG+ IDA+ DL + + G+I + S ++G+ V
Sbjct: 431 KQLAVEAYADAVEALPRTLAENTGMDPIDALVDLRARY-ETEGLAGIISSGRSGEIGDPV 489
Query: 194 DANIFDLYSVRHWAIKFASDAAISILKVDQVIMAR 298
+ + D +V+ AI+ A++AA I+++D VI A+
Sbjct: 490 ELGVIDPVAVKREAIESATEAATMIVRIDDVIAAK 524
>sp|O93624|THS_METTL Thermosome subunit (Chaperonin subunit)
Length = 544
Score = 53.5 bits (127), Expect = 2e-07
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Frame = +2
Query: 5 SDLRQYAIRQFGQSFDLVVKALIQNTGLKAIDAVTDLHQLHNQGNQ-YHGLICNDDSSKL 181
S Q A+R F + ++V + L +N GL AI+ + L H +GN Y+GL N + +
Sbjct: 425 SGREQLAVRAFADALEVVPRTLAENAGLDAIEMLVKLRAKHAEGNNAYYGL--NVFTGDV 482
Query: 182 GNVVDANIFDLYSVRHWAIKFASDAAISILKVDQVIMARPAGG 310
N+ + + + V+ AI+ A++A +L++D VI A G
Sbjct: 483 ENMTENGVVEPLRVKTQAIQSATEATEMLLRIDDVIAAEKLSG 525
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,732,073
Number of Sequences: 369166
Number of extensions: 992416
Number of successful extensions: 2888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2877
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)