Planaria EST Database


DrC_01675

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01675
         (679 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05080|CYK2_YEAST  Cytokinesis 2 protein                        32   1.5  
sp|P06835|BGLS_HANAN  Beta-glucosidase precursor (Gentiobias...    32   1.5  
sp|P44710|NUDC_HAEIN  NADH pyrophosphatase                         32   2.0  
sp|Q86SQ4|GP126_HUMAN  Probable G-protein coupled receptor 1...    30   4.4  
sp|P53947|YNF8_YEAST  Hypothetical 35.0 kDa protein in ARP5-...    30   5.8  
sp|P18171|DEC13_DROME  Defective chorion-1 protein, FC177 is...    30   5.8  
sp|Q89AP6|APBE_BUCBP  Probable thiamine biosynthesis protein...    30   5.8  
sp|P07751|SPTA2_CHICK  Spectrin alpha chain, brain (Spectrin...    30   7.6  
sp|Q9J5B8|PAP1_FOWPV  Poly(A) polymerase catalytic subunit (...    29   9.9  
sp|O59646|T2MW_METWO  Type II restriction enzyme MwoI (Endon...    29   9.9  
>sp|Q05080|CYK2_YEAST Cytokinesis 2 protein
          Length = 669

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
 Frame = +1

Query: 34  DPLLRSYYRPSLTQLNSDSSVHKNINKFHQPDLFINEVPAHVPNNFISLELPGI-AHGRK 210
           +P L     P   Q N D SV +   K  +P   + E       +  + +  G+  H R 
Sbjct: 362 NPTLSLRSSPVQLQSNVDDSVLRQ--KPDKPRPIVGEEQLKPDEDSKNPDEKGLMVHKRN 419

Query: 211 QSLLEYERRAQKDPVDCEWLTDNPNARQYHDNFITLTNSYWNESSKLDSSMHDKAWNSSN 390
           QSL      +  +P D   +      RQ  ++  T  +S  N     DS    K+WNSSN
Sbjct: 420 QSLSSPSESSSSNPTDFSHI----KKRQSMESMTTSVSSMANSID--DSQRFAKSWNSSN 473

Query: 391 EISRRMIDIENP 426
              + M  ++ P
Sbjct: 474 RKRKSMSHLQVP 485
>sp|P06835|BGLS_HANAN Beta-glucosidase precursor (Gentiobiase) (Cellobiase)
           (Beta-D-glucoside glucohydrolase)
          Length = 825

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 25/151 (16%)
 Frame = +1

Query: 235 RAQKDPVDCEWLTDNPN------ARQYHDNFITLTNSYWNES-SKLDSSMHD----KAWN 381
           RAQ++ +  E++ D+ N      +  Y D  I + NS   E    +D +  D      W+
Sbjct: 483 RAQQEKISYEFIGDSWNQAAAMDSALYADAAIEVANSVAGEEIGDVDGNYGDLNNLTLWH 542

Query: 382 SSNEISRRMIDIENPFWVVEKSWNQI--EPGSQHDQMAR------------TLLPVGLLS 519
           ++  + + +  I N   V+  S  QI  EP   ++ +              T+L   L  
Sbjct: 543 NAVPLIKNISSINNNTIVIVTSGQQIDLEPFIDNENVTAVIYSSYLGQDFGTVLAKVLFG 602

Query: 520 NENPSGVFSSSIPDNLWKFKPDDTNVSLPNP 612
           +ENPSG    +I  ++  + P    V +P+P
Sbjct: 603 DENPSGKLPFTIAKDVNDYIPVIEKVDVPDP 633
>sp|P44710|NUDC_HAEIN NADH pyrophosphatase
          Length = 264

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
 Frame = -3

Query: 407 IRRDISLEEFQALSCIEESNFEL-------SFQYEFVSVMKL------SWYCLAFGLSVN 267
           I +DI LE  QA+   E  N+ L       S + E+VS+  L       ++ L+ G+ +N
Sbjct: 31  IAKDIDLEGLQAMQIGEWKNYPLWLVAEQESDEREYVSLSNLLSLPEDEFHILSRGVEIN 90

Query: 266 HSQSTGSFC 240
           H   T  FC
Sbjct: 91  HFLKTHKFC 99
>sp|Q86SQ4|GP126_HUMAN Probable G-protein coupled receptor 126 precursor
          Length = 1221

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
 Frame = -3

Query: 446 DFSTTQNGFSMSIIRRDISLEEFQALSCIEESNFELSFQYEFVSVMKLSWYCLAF-GLSV 270
           DFS  + GF+ S IR  +SL   + +       +++S   + +S+ +LS + L F    V
Sbjct: 134 DFSIQKKGFNASYIRVAVSLRNQKVILPQTSDAYQVSVA-KSISIPELSAFTLCFEATKV 192

Query: 269 NH--------SQSTGSFCALLSY-----------SNNDCFRPCAIPGNSRE 174
            H        S S  SF  LLS+           S++ C    A+P   +E
Sbjct: 193 GHEDSDWTAFSYSNASFTQLLSFGKAKSGYFLSISDSKCLLNNALPVKEKE 243
>sp|P53947|YNF8_YEAST Hypothetical 35.0 kDa protein in ARP5-OMP2 intergenic region
          Length = 316

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
 Frame = +1

Query: 265 WLTDNPNARQYHDNFITLTNSYWNESSKLDSSMHDKAWNSSNEISRRMIDIENPFWVVEK 444
           WL  +  +R++     T+TNSY N+S  L    H      S+ +     DI +    ++ 
Sbjct: 112 WLVSSYLSRRF-----TMTNSYANDSKNLYRGHH----KHSSSLQSNPFDINDEKSYMQD 162

Query: 445 SWNQIE--PGSQHDQMARTLLPVGLLSNENPSGVF------SSSIPDNLWKFKPDDTNVS 600
            W+ +     SQ++  A    P+     +N   +F       S    +  + +  DTN+ 
Sbjct: 163 DWDSMSQLESSQYEDAASPFNPIQDPFTDNRRSLFISPTLQVSQYEKSHSRHQSKDTNIF 222

Query: 601 LPNP 612
           + +P
Sbjct: 223 IDDP 226
>sp|P18171|DEC13_DROME Defective chorion-1 protein, FC177 isoform precursor
          Length = 1590

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 223  EYERRAQKDPVDCEWLTDNPNAR-QY-HDNFITLTNS 327
            +YE  AQ++P++ E L  +PN   QY H +F+ LT S
Sbjct: 1117 QYEEDAQQEPMEEEQLQHDPNTEPQYNHKDFVRLTTS 1153
>sp|Q89AP6|APBE_BUCBP Probable thiamine biosynthesis protein apbE precursor
          Length = 341

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
 Frame = +1

Query: 325 SYWNESSKLDSSM-----HDKAWNSSNEISRRMIDIENPFWVVEKSWNQIEPGSQHDQMA 489
           +Y+N   K++  +        +WN +++IS              K++   +P   +  +A
Sbjct: 51  TYYNLKKKIEKQLCYDNNQISSWNKNSDISN-----------FNKNFTT-KPQKINKNLA 98

Query: 490 RTLLPVGLLSNENPSGVF--SSSIPDNLWKFKPDDTNVSLPNPCKLDSIE*LVSLWNVKI 663
           + L+ +GLL  +  + +   +S    N+W F P     S+P+   +   + L  L ++K+
Sbjct: 99  K-LISIGLLVGKKTNNLLDITSGTLINIWGFGPTSRKHSIPSKKTIKLAQMLTGLNHIKL 157

Query: 664 VIN 672
           +IN
Sbjct: 158 LIN 160
>sp|P07751|SPTA2_CHICK Spectrin alpha chain, brain (Spectrin, non-erythroid alpha chain)
           (Fodrin alpha chain)
          Length = 2477

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +1

Query: 67  LTQLNSDSSVHKNINKFHQPDLFINEVPAHVPNNFISLELPGIAH-GRKQSLLEYERRAQ 243
           L + N     ++N+      +L++ EV  H+ ++    +L  + +  +K +LLE +  A 
Sbjct: 674 LREANQQQQFNRNVEDI---ELWLYEVEGHLASDDYGKDLTSVQNLQKKHALLEADVAAH 730

Query: 244 KDPVDCEWLTDNPNARQYHD 303
           +DP+D   +     ARQ+ D
Sbjct: 731 QDPIDGITI----QARQFQD 746
>sp|Q9J5B8|PAP1_FOWPV Poly(A) polymerase catalytic subunit (Poly(A) polymerase large
           subunit) (PAP-L) (VP55)
          Length = 472

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 167 ISFLLNYLVLHMDESNHCWNMKEEHKKTQLIVNG*QIIRMLDNTMIIS*RLQI 325
           + FL NY+++H +E+NH  +     +KT  ++       M+DN  I+   +Q+
Sbjct: 226 VPFLKNYVIMHDEETNHVMDTFNIREKTMNMIPK----IMIDNMYIVDPCIQL 274
>sp|O59646|T2MW_METWO Type II restriction enzyme MwoI (Endonuclease MwoI) (R.MwoI)
          Length = 363

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
 Frame = +1

Query: 55  YRPSLTQLNSDSSVHKNIN--KFHQPDLFINEVPAHVPNNFISLELPGIAHGRKQSLLEY 228
           Y   LT  N +S +H +I       P  F + VP             GI       +L+ 
Sbjct: 94  YSSDLTYENDNSIIHIDIKTANLENPSDFKDTVPL------------GINQSSYPGVLDC 141

Query: 229 ERRAQKDPVDCEWLTDNPNARQYHDNFITLTNS 327
           + R +    DC+ +   PN    ++N +T+TN+
Sbjct: 142 KIRGKNIKADCKKIKVYPNIPTTYNNKLTITNA 174
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,594,974
Number of Sequences: 369166
Number of extensions: 1791141
Number of successful extensions: 4894
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4894
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)