Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_J11
(679 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05080|CYK2_YEAST Cytokinesis 2 protein 32 1.5
sp|P06835|BGLS_HANAN Beta-glucosidase precursor (Gentiobias... 32 1.5
sp|P44710|NUDC_HAEIN NADH pyrophosphatase 32 2.0
sp|Q86SQ4|GP126_HUMAN Probable G-protein coupled receptor 1... 30 4.4
sp|P53947|YNF8_YEAST Hypothetical 35.0 kDa protein in ARP5-... 30 5.8
sp|P18171|DEC13_DROME Defective chorion-1 protein, FC177 is... 30 5.8
sp|Q89AP6|APBE_BUCBP Probable thiamine biosynthesis protein... 30 5.8
sp|P07751|SPTA2_CHICK Spectrin alpha chain, brain (Spectrin... 30 7.6
sp|Q9J5B8|PAP1_FOWPV Poly(A) polymerase catalytic subunit (... 29 9.9
sp|O59646|T2MW_METWO Type II restriction enzyme MwoI (Endon... 29 9.9
>sp|Q05080|CYK2_YEAST Cytokinesis 2 protein
Length = 669
Score = 32.0 bits (71), Expect = 1.5
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Frame = +1
Query: 34 DPLLRSYYRPSLTQLNSDSSVHKNINKFHQPDLFINEVPAHVPNNFISLELPGI-AHGRK 210
+P L P Q N D SV + K +P + E + + + G+ H R
Sbjct: 362 NPTLSLRSSPVQLQSNVDDSVLRQ--KPDKPRPIVGEEQLKPDEDSKNPDEKGLMVHKRN 419
Query: 211 QSLLEYERRAQKDPVDCEWLTDNPNARQYHDNFITLTNSYWNESSKLDSSMHDKAWNSSN 390
QSL + +P D + RQ ++ T +S N DS K+WNSSN
Sbjct: 420 QSLSSPSESSSSNPTDFSHI----KKRQSMESMTTSVSSMANSID--DSQRFAKSWNSSN 473
Query: 391 EISRRMIDIENP 426
+ M ++ P
Sbjct: 474 RKRKSMSHLQVP 485
>sp|P06835|BGLS_HANAN Beta-glucosidase precursor (Gentiobiase) (Cellobiase)
(Beta-D-glucoside glucohydrolase)
Length = 825
Score = 32.0 bits (71), Expect = 1.5
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 25/151 (16%)
Frame = +1
Query: 235 RAQKDPVDCEWLTDNPN------ARQYHDNFITLTNSYWNES-SKLDSSMHD----KAWN 381
RAQ++ + E++ D+ N + Y D I + NS E +D + D W+
Sbjct: 483 RAQQEKISYEFIGDSWNQAAAMDSALYADAAIEVANSVAGEEIGDVDGNYGDLNNLTLWH 542
Query: 382 SSNEISRRMIDIENPFWVVEKSWNQI--EPGSQHDQMAR------------TLLPVGLLS 519
++ + + + I N V+ S QI EP ++ + T+L L
Sbjct: 543 NAVPLIKNISSINNNTIVIVTSGQQIDLEPFIDNENVTAVIYSSYLGQDFGTVLAKVLFG 602
Query: 520 NENPSGVFSSSIPDNLWKFKPDDTNVSLPNP 612
+ENPSG +I ++ + P V +P+P
Sbjct: 603 DENPSGKLPFTIAKDVNDYIPVIEKVDVPDP 633
>sp|P44710|NUDC_HAEIN NADH pyrophosphatase
Length = 264
Score = 31.6 bits (70), Expect = 2.0
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Frame = -3
Query: 407 IRRDISLEEFQALSCIEESNFEL-------SFQYEFVSVMKL------SWYCLAFGLSVN 267
I +DI LE QA+ E N+ L S + E+VS+ L ++ L+ G+ +N
Sbjct: 31 IAKDIDLEGLQAMQIGEWKNYPLWLVAEQESDEREYVSLSNLLSLPEDEFHILSRGVEIN 90
Query: 266 HSQSTGSFC 240
H T FC
Sbjct: 91 HFLKTHKFC 99
>sp|Q86SQ4|GP126_HUMAN Probable G-protein coupled receptor 126 precursor
Length = 1221
Score = 30.4 bits (67), Expect = 4.4
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Frame = -3
Query: 446 DFSTTQNGFSMSIIRRDISLEEFQALSCIEESNFELSFQYEFVSVMKLSWYCLAF-GLSV 270
DFS + GF+ S IR +SL + + +++S + +S+ +LS + L F V
Sbjct: 134 DFSIQKKGFNASYIRVAVSLRNQKVILPQTSDAYQVSVA-KSISIPELSAFTLCFEATKV 192
Query: 269 NH--------SQSTGSFCALLSY-----------SNNDCFRPCAIPGNSRE 174
H S S SF LLS+ S++ C A+P +E
Sbjct: 193 GHEDSDWTAFSYSNASFTQLLSFGKAKSGYFLSISDSKCLLNNALPVKEKE 243
>sp|P53947|YNF8_YEAST Hypothetical 35.0 kDa protein in ARP5-OMP2 intergenic region
Length = 316
Score = 30.0 bits (66), Expect = 5.8
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Frame = +1
Query: 265 WLTDNPNARQYHDNFITLTNSYWNESSKLDSSMHDKAWNSSNEISRRMIDIENPFWVVEK 444
WL + +R++ T+TNSY N+S L H S+ + DI + ++
Sbjct: 112 WLVSSYLSRRF-----TMTNSYANDSKNLYRGHH----KHSSSLQSNPFDINDEKSYMQD 162
Query: 445 SWNQIE--PGSQHDQMARTLLPVGLLSNENPSGVF------SSSIPDNLWKFKPDDTNVS 600
W+ + SQ++ A P+ +N +F S + + + DTN+
Sbjct: 163 DWDSMSQLESSQYEDAASPFNPIQDPFTDNRRSLFISPTLQVSQYEKSHSRHQSKDTNIF 222
Query: 601 LPNP 612
+ +P
Sbjct: 223 IDDP 226
>sp|P18171|DEC13_DROME Defective chorion-1 protein, FC177 isoform precursor
Length = 1590
Score = 30.0 bits (66), Expect = 5.8
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +1
Query: 223 EYERRAQKDPVDCEWLTDNPNAR-QY-HDNFITLTNS 327
+YE AQ++P++ E L +PN QY H +F+ LT S
Sbjct: 1117 QYEEDAQQEPMEEEQLQHDPNTEPQYNHKDFVRLTTS 1153
>sp|Q89AP6|APBE_BUCBP Probable thiamine biosynthesis protein apbE precursor
Length = 341
Score = 30.0 bits (66), Expect = 5.8
Identities = 26/123 (21%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Frame = +1
Query: 325 SYWNESSKLDSSM-----HDKAWNSSNEISRRMIDIENPFWVVEKSWNQIEPGSQHDQMA 489
+Y+N K++ + +WN +++IS K++ +P + +A
Sbjct: 51 TYYNLKKKIEKQLCYDNNQISSWNKNSDISN-----------FNKNFTT-KPQKINKNLA 98
Query: 490 RTLLPVGLLSNENPSGVF--SSSIPDNLWKFKPDDTNVSLPNPCKLDSIE*LVSLWNVKI 663
+ L+ +GLL + + + +S N+W F P S+P+ + + L L ++K+
Sbjct: 99 K-LISIGLLVGKKTNNLLDITSGTLINIWGFGPTSRKHSIPSKKTIKLAQMLTGLNHIKL 157
Query: 664 VIN 672
+IN
Sbjct: 158 LIN 160
>sp|P07751|SPTA2_CHICK Spectrin alpha chain, brain (Spectrin, non-erythroid alpha chain)
(Fodrin alpha chain)
Length = 2477
Score = 29.6 bits (65), Expect = 7.6
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 67 LTQLNSDSSVHKNINKFHQPDLFINEVPAHVPNNFISLELPGIAH-GRKQSLLEYERRAQ 243
L + N ++N+ +L++ EV H+ ++ +L + + +K +LLE + A
Sbjct: 674 LREANQQQQFNRNVEDI---ELWLYEVEGHLASDDYGKDLTSVQNLQKKHALLEADVAAH 730
Query: 244 KDPVDCEWLTDNPNARQYHD 303
+DP+D + ARQ+ D
Sbjct: 731 QDPIDGITI----QARQFQD 746
>sp|Q9J5B8|PAP1_FOWPV Poly(A) polymerase catalytic subunit (Poly(A) polymerase large
subunit) (PAP-L) (VP55)
Length = 472
Score = 29.3 bits (64), Expect = 9.9
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +2
Query: 167 ISFLLNYLVLHMDESNHCWNMKEEHKKTQLIVNG*QIIRMLDNTMIIS*RLQI 325
+ FL NY+++H +E+NH + +KT ++ M+DN I+ +Q+
Sbjct: 226 VPFLKNYVIMHDEETNHVMDTFNIREKTMNMIPK----IMIDNMYIVDPCIQL 274
>sp|O59646|T2MW_METWO Type II restriction enzyme MwoI (Endonuclease MwoI) (R.MwoI)
Length = 363
Score = 29.3 bits (64), Expect = 9.9
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Frame = +1
Query: 55 YRPSLTQLNSDSSVHKNIN--KFHQPDLFINEVPAHVPNNFISLELPGIAHGRKQSLLEY 228
Y LT N +S +H +I P F + VP GI +L+
Sbjct: 94 YSSDLTYENDNSIIHIDIKTANLENPSDFKDTVPL------------GINQSSYPGVLDC 141
Query: 229 ERRAQKDPVDCEWLTDNPNARQYHDNFITLTNS 327
+ R + DC+ + PN ++N +T+TN+
Sbjct: 142 KIRGKNIKADCKKIKVYPNIPTTYNNKLTITNA 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,594,974
Number of Sequences: 369166
Number of extensions: 1791141
Number of successful extensions: 4894
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4894
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)