Planaria EST Database


DrC_01669

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01669
         (692 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VX09|ARP8_DROME  Probable actin-related protein 8             37   0.050
sp|Q9H981|ARP8_HUMAN  Actin-related protein 8                      33   0.55 
sp|P59679|ARP8_BRARE  Actin-related protein 8                      32   1.2  
sp|Q9Y247|XAP5L_HUMAN  XAP-5-like protein                          32   1.6  
sp|Q8R2S9|ARP8_MOUSE  Actin-related protein 8                      32   1.6  
sp|Q69DK8|C1S_PIG  Complement C1s subcomponent precursor (C1...    31   2.7  
sp|P61749|GPDA_WOLPM  Glycerol-3-phosphate dehydrogenase [NA...    31   2.7  
sp|Q04002|SCC2_YEAST  Sister chromatid cohesion protein 2          30   6.1  
sp|P13728|SGS3_DROYA  Salivary glue protein SGS-3 precursor        30   6.1  
sp|P40467|YIN0_YEAST  Putative 108.8 kDa transcriptional reg...    30   7.9  
>sp|Q9VX09|ARP8_DROME Probable actin-related protein 8
          Length = 607

 Score = 37.0 bits (84), Expect = 0.050
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +1

Query: 547 DLWISDKDWRKYGSRAIREKAPF 615
           +LWIS  DW+++G R +RE++PF
Sbjct: 583 ELWISQNDWQRHGLRVLRERSPF 605
>sp|Q9H981|ARP8_HUMAN Actin-related protein 8
          Length = 624

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 532 VGYCDDLWISDKDWRKYGSRAIREKAPF 615
           +G   +LWI  ++W+++G R +RE+A F
Sbjct: 595 LGTTQELWIYQREWQRFGVRMLRERAAF 622
>sp|P59679|ARP8_BRARE Actin-related protein 8
          Length = 623

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 547 DLWISDKDWRKYGSRAIREKAPF 615
           +LWI  ++W+++G R +RE+A F
Sbjct: 599 ELWIHQREWQRFGVRMLRERAAF 621
>sp|Q9Y247|XAP5L_HUMAN XAP-5-like protein
          Length = 325

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +2

Query: 98  KRRQRDERGQFSASFWTNSTTRRTMPTRNESNIESYSRNLLEAVRK 235
           + + +DE  + + S+W  S  RRT+  R  + ++ + +  L+ +RK
Sbjct: 177 REKVKDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRK 222
>sp|Q8R2S9|ARP8_MOUSE Actin-related protein 8
          Length = 624

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 547 DLWISDKDWRKYGSRAIREKAPF 615
           +LWI  ++W+++G R +RE+A F
Sbjct: 600 ELWIYQREWQRFGVRMLRERAAF 622
>sp|Q69DK8|C1S_PIG Complement C1s subcomponent precursor (C1 esterase) [Contains:
           Complement C1s subcomponent heavy chain; Complement C1s
           subcomponent light chain]
          Length = 687

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 516 WLPSKLRCEPVSHR*NRCGSPSTSPH 439
           W  SKLRC+PV      CGSP   PH
Sbjct: 347 WSNSKLRCQPVD-----CGSPEPIPH 367
>sp|P61749|GPDA_WOLPM Glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent
           glycerol-3-phosphate dehydrogenase)
          Length = 327

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +2

Query: 176 TRNESNIESYSRNLLEAVRKTIRMSACRLND------AIVKSINKSLSSLAVVIDNITET 337
           T NE+  ES     +   R++ ++  CR++D      AI   IN S++ LAV   ++ + 
Sbjct: 29  THNETTFES-----INGKRESDKLPGCRISDNVSVKLAIEDIINASVTILAVPTQSLRKV 83

Query: 338 SQQLCSVILAGEPFGVLGC 394
            QQL +  L  +   +L C
Sbjct: 84  CQQLHNCNLKKDVAIILAC 102
>sp|Q04002|SCC2_YEAST Sister chromatid cohesion protein 2
          Length = 1493

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = +2

Query: 146  TNSTTRRTMPT--RNESNIESYSRNLLEAVRKTIRMSACRLNDAIVKSINKSLSSLAV 313
            TNS+ ++++     N SNI   S+  L ++ KTI ++  RL + I+  I  ++SSL+V
Sbjct: 1351 TNSSVQKSIFVLCTNISNITFVSQYDLVSLLKTIDLTTDRLKEVIMDEIGDNVSSLSV 1408
>sp|P13728|SGS3_DROYA Salivary glue protein SGS-3 precursor
          Length = 263

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 465 CGSPSTSPHCDKTLFQTNAPTISTQPRTPKGSPAR 361
           CG P+TSP   +T   T APT +T   T    P R
Sbjct: 26  CGCPTTSPKPCQTTVPTCAPTTTTTTTTTCAPPTR 60
>sp|P40467|YIN0_YEAST Putative 108.8 kDa transcriptional regulatory protein in FKH1-STH1
           intergenic region
          Length = 964

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
 Frame = -2

Query: 634 AKNS-PEEMVPSLESLSIRISSNLCR*STDRHSTPP---NVIIVAPFQAAL*AGIPSVKS 467
           +KNS P+E +P+++S S   SSN  + S D +S  P    + I+ P +A     +  VKS
Sbjct: 196 SKNSTPDEFLPNMKSDSNSASSNREQDSVDTYSNIPVGREIKIILPPKA---IALQFVKS 252

Query: 466 LW------ITFYF--SALRQNSVSNECSNNFHAAKNSKRFP 368
            W      + FY   S +RQ     E   N + +K  +  P
Sbjct: 253 TWEHCCVLLRFYHRPSFIRQLDELYETDPNNYTSKQMQFLP 293
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,513,522
Number of Sequences: 369166
Number of extensions: 1819889
Number of successful extensions: 5849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5847
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)