Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_H15
(692 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VX09|ARP8_DROME Probable actin-related protein 8 37 0.050
sp|Q9H981|ARP8_HUMAN Actin-related protein 8 33 0.55
sp|P59679|ARP8_BRARE Actin-related protein 8 32 1.2
sp|Q9Y247|XAP5L_HUMAN XAP-5-like protein 32 1.6
sp|Q8R2S9|ARP8_MOUSE Actin-related protein 8 32 1.6
sp|Q69DK8|C1S_PIG Complement C1s subcomponent precursor (C1... 31 2.7
sp|P61749|GPDA_WOLPM Glycerol-3-phosphate dehydrogenase [NA... 31 2.7
sp|Q04002|SCC2_YEAST Sister chromatid cohesion protein 2 30 6.1
sp|P13728|SGS3_DROYA Salivary glue protein SGS-3 precursor 30 6.1
sp|P40467|YIN0_YEAST Putative 108.8 kDa transcriptional reg... 30 7.9
>sp|Q9VX09|ARP8_DROME Probable actin-related protein 8
Length = 607
Score = 37.0 bits (84), Expect = 0.050
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 547 DLWISDKDWRKYGSRAIREKAPF 615
+LWIS DW+++G R +RE++PF
Sbjct: 583 ELWISQNDWQRHGLRVLRERSPF 605
>sp|Q9H981|ARP8_HUMAN Actin-related protein 8
Length = 624
Score = 33.5 bits (75), Expect = 0.55
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 532 VGYCDDLWISDKDWRKYGSRAIREKAPF 615
+G +LWI ++W+++G R +RE+A F
Sbjct: 595 LGTTQELWIYQREWQRFGVRMLRERAAF 622
>sp|P59679|ARP8_BRARE Actin-related protein 8
Length = 623
Score = 32.3 bits (72), Expect = 1.2
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 547 DLWISDKDWRKYGSRAIREKAPF 615
+LWI ++W+++G R +RE+A F
Sbjct: 599 ELWIHQREWQRFGVRMLRERAAF 621
>sp|Q9Y247|XAP5L_HUMAN XAP-5-like protein
Length = 325
Score = 32.0 bits (71), Expect = 1.6
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 98 KRRQRDERGQFSASFWTNSTTRRTMPTRNESNIESYSRNLLEAVRK 235
+ + +DE + + S+W S RRT+ R + ++ + + L+ +RK
Sbjct: 177 REKVKDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGLRK 222
>sp|Q8R2S9|ARP8_MOUSE Actin-related protein 8
Length = 624
Score = 32.0 bits (71), Expect = 1.6
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 547 DLWISDKDWRKYGSRAIREKAPF 615
+LWI ++W+++G R +RE+A F
Sbjct: 600 ELWIYQREWQRFGVRMLRERAAF 622
>sp|Q69DK8|C1S_PIG Complement C1s subcomponent precursor (C1 esterase) [Contains:
Complement C1s subcomponent heavy chain; Complement C1s
subcomponent light chain]
Length = 687
Score = 31.2 bits (69), Expect = 2.7
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -3
Query: 516 WLPSKLRCEPVSHR*NRCGSPSTSPH 439
W SKLRC+PV CGSP PH
Sbjct: 347 WSNSKLRCQPVD-----CGSPEPIPH 367
>sp|P61749|GPDA_WOLPM Glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent
glycerol-3-phosphate dehydrogenase)
Length = 327
Score = 31.2 bits (69), Expect = 2.7
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Frame = +2
Query: 176 TRNESNIESYSRNLLEAVRKTIRMSACRLND------AIVKSINKSLSSLAVVIDNITET 337
T NE+ ES + R++ ++ CR++D AI IN S++ LAV ++ +
Sbjct: 29 THNETTFES-----INGKRESDKLPGCRISDNVSVKLAIEDIINASVTILAVPTQSLRKV 83
Query: 338 SQQLCSVILAGEPFGVLGC 394
QQL + L + +L C
Sbjct: 84 CQQLHNCNLKKDVAIILAC 102
>sp|Q04002|SCC2_YEAST Sister chromatid cohesion protein 2
Length = 1493
Score = 30.0 bits (66), Expect = 6.1
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +2
Query: 146 TNSTTRRTMPT--RNESNIESYSRNLLEAVRKTIRMSACRLNDAIVKSINKSLSSLAV 313
TNS+ ++++ N SNI S+ L ++ KTI ++ RL + I+ I ++SSL+V
Sbjct: 1351 TNSSVQKSIFVLCTNISNITFVSQYDLVSLLKTIDLTTDRLKEVIMDEIGDNVSSLSV 1408
>sp|P13728|SGS3_DROYA Salivary glue protein SGS-3 precursor
Length = 263
Score = 30.0 bits (66), Expect = 6.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 465 CGSPSTSPHCDKTLFQTNAPTISTQPRTPKGSPAR 361
CG P+TSP +T T APT +T T P R
Sbjct: 26 CGCPTTSPKPCQTTVPTCAPTTTTTTTTTCAPPTR 60
>sp|P40467|YIN0_YEAST Putative 108.8 kDa transcriptional regulatory protein in FKH1-STH1
intergenic region
Length = 964
Score = 29.6 bits (65), Expect = 7.9
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Frame = -2
Query: 634 AKNS-PEEMVPSLESLSIRISSNLCR*STDRHSTPP---NVIIVAPFQAAL*AGIPSVKS 467
+KNS P+E +P+++S S SSN + S D +S P + I+ P +A + VKS
Sbjct: 196 SKNSTPDEFLPNMKSDSNSASSNREQDSVDTYSNIPVGREIKIILPPKA---IALQFVKS 252
Query: 466 LW------ITFYF--SALRQNSVSNECSNNFHAAKNSKRFP 368
W + FY S +RQ E N + +K + P
Sbjct: 253 TWEHCCVLLRFYHRPSFIRQLDELYETDPNNYTSKQMQFLP 293
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,513,522
Number of Sequences: 369166
Number of extensions: 1819889
Number of successful extensions: 5849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5847
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)