Planaria EST Database


DrC_01667

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01667
         (778 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P43254|COP1_ARATH  Ubiquitin ligase protein COP1 (Constit...    38   0.027
sp|P79051|RHP16_SCHPO  DNA repair protein rhp16 (RAD16 homolog)    37   0.060
sp|Q9R1A8|RFWD2_MOUSE  Ring finger and WD repeat domain prot...    37   0.079
sp|P93471|COP1_PEA  Ubiquitin ligase protein COP1 (Constitut...    37   0.079
sp|Q8NHY2|RFWD2_HUMAN  Ring finger and WD repeat domain prot...    37   0.079
sp|P70196|TRAF6_MOUSE  TNF receptor-associated factor 6            35   0.30 
sp|Q9Y4K3|TRAF6_HUMAN  TNF receptor-associated factor 6 (Int...    34   0.39 
sp|Q8N448|LNX2_HUMAN  Ligand of Numb-protein X 2 (Numb-bindi...    34   0.39 
sp|Q6J6I9|BRCA1_MACMU  Breast cancer type 1 susceptibility p...    34   0.51 
sp|Q6J6J0|BRCA1_PONPY  Breast cancer type 1 susceptibility p...    34   0.51 
>sp|P43254|COP1_ARATH Ubiquitin ligase protein COP1 (Constitutive photomorphogenesis
           protein 1)
          Length = 675

 Score = 38.1 bits (87), Expect = 0.027
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +1

Query: 193 DLVCLICGKIIKNACQTICGCKFCLQCIEQYL 288
           DL+C IC +IIK+A  T CG  FC  CI  +L
Sbjct: 49  DLLCPICMQIIKDAFLTACGHSFCYMCIITHL 80
>sp|P79051|RHP16_SCHPO DNA repair protein rhp16 (RAD16 homolog)
          Length = 861

 Score = 37.0 bits (84), Expect = 0.060
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +1

Query: 172 IDVLSHHDLVCLICGKIIKNACQTICGCKFCLQCIEQYL---GGEENV 306
           +D+ +  ++VC IC ++ ++A ++ C   FC  C+ +Y+   G  ENV
Sbjct: 599 VDIENQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENV 646
>sp|Q9R1A8|RFWD2_MOUSE Ring finger and WD repeat domain protein 2 (Ubiquitin ligase
           protein COP1) (Constitutive photomorphogenesis protein 1
           homolog) (mCOP1)
          Length = 733

 Score = 36.6 bits (83), Expect = 0.079
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 190 HDLVCLICGKIIKNACQTICGCKFCLQCIEQYL 288
           +D VC IC  +I+ A  T CG  FC +CI Q L
Sbjct: 134 NDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSL 166
>sp|P93471|COP1_PEA Ubiquitin ligase protein COP1 (Constitutive photomorphogenesis
           protein 1)
          Length = 672

 Score = 36.6 bits (83), Expect = 0.079
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 193 DLVCLICGKIIKNACQTICGCKFCLQCIEQYL 288
           D +C IC +IIK+A  T CG  FC  CI  +L
Sbjct: 44  DFLCPICMQIIKDAFLTACGHSFCYMCIITHL 75
>sp|Q8NHY2|RFWD2_HUMAN Ring finger and WD repeat domain protein 2 (Ubiquitin ligase
           protein COP1) (Constitutive photomorphogenesis protein 1
           homolog) (hCOP1)
          Length = 731

 Score = 36.6 bits (83), Expect = 0.079
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 190 HDLVCLICGKIIKNACQTICGCKFCLQCIEQYL 288
           +D VC IC  +I+ A  T CG  FC +CI Q L
Sbjct: 132 NDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSL 164
>sp|P70196|TRAF6_MOUSE TNF receptor-associated factor 6
          Length = 530

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 369 DNATNRQISQIKVKCPEPFCQCIVELSKMHCHMKSHKIKCPYSDFRCSQ 515
           DN   R+I  + VKCP   C   +EL     H++ H++ C ++   C Q
Sbjct: 120 DNFAKREILSLTVKCPNKGCLQKMELR----HLEDHQVHCEFALVNCPQ 164

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 112 DMSSIIYEEIWNLLDAYQLDIDVLSHHDLVCLICGKIIKNACQTICGCKFCLQCI 276
           ++SS   EEI      Y ++ D        C IC   ++ A QT CG +FC  CI
Sbjct: 44  NLSSSFMEEI----QGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACI 94
>sp|Q9Y4K3|TRAF6_HUMAN TNF receptor-associated factor 6 (Interleukin 1 signal transducer)
           (RING finger protein 85)
          Length = 522

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = +1

Query: 112 DMSSIIYEEIWNLLDAYQLDIDVLSHHDLVCLICGKIIKNACQTICGCKFCLQCI 276
           ++SS   EEI      Y ++ D        C IC   ++ A QT CG +FC  CI
Sbjct: 44  NLSSSFMEEI----QGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACI 94
>sp|Q8N448|LNX2_HUMAN Ligand of Numb-protein X 2 (Numb-binding protein 2) (PDZ
           domain-containing RING finger protein 1)
          Length = 690

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 145 NLLDAYQLDIDVLSHHDLVCLICGKIIKNACQTICGCKFCLQCIEQYL 288
           N L  YQ ++D     DLVC IC + +     T CG  FC +C+  +L
Sbjct: 35  NHLYNYQNEVD----DDLVCHICLQPLLQPLDTPCGHTFCYKCLRNFL 78
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog
          Length = 1863

 Score = 33.9 bits (76), Expect = 0.51
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +1

Query: 109 IDMSSIIYEEIWNLLDAYQLDIDVLSHHDLVCLICGKIIKNACQTICGCKFCLQCIEQYL 288
           +D+S++  EE+ N+++A Q  ++        C IC ++IK    T C   FC  C+ + L
Sbjct: 1   MDLSAVRVEEVQNVINAMQKILE--------CPICLELIKEPVSTKCDHIFCRFCMLKLL 52

Query: 289 GGEENVAQ 312
             ++  +Q
Sbjct: 53  NQKKGPSQ 60
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog
          Length = 1863

 Score = 33.9 bits (76), Expect = 0.51
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +1

Query: 109 IDMSSIIYEEIWNLLDAYQLDIDVLSHHDLVCLICGKIIKNACQTICGCKFCLQCIEQYL 288
           +D+S++  EE+ N+++A Q  ++        C IC ++IK    T C   FC  C+ + L
Sbjct: 1   MDLSAVRVEEVQNVINAMQKILE--------CPICLELIKEPVSTKCDHIFCKFCMLKLL 52

Query: 289 GGEENVAQ 312
             ++  +Q
Sbjct: 53  NQKKGPSQ 60
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,258,549
Number of Sequences: 369166
Number of extensions: 1508479
Number of successful extensions: 4096
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4094
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)