Planaria EST Database


DrC_01665

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01665
         (565 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26599|PTBP1_HUMAN  Polypyrimidine tract-binding protein ...   139   6e-33
sp|Q8BHD7|ROD1_MOUSE  Regulator of differentiation 1 (Rod1)       138   1e-32
sp|Q9Z118|ROD1_RAT  Regulator of differentiation 1 (Rod1)         138   1e-32
sp|Q00438|PTBP1_RAT  Polypyrimidine tract-binding protein 1 ...   137   1e-32
sp|O95758|ROD1_HUMAN  Regulator of differentiation 1 (Rod1)       137   2e-32
sp|Q29099|PTBP1_PIG  Polypyrimidine tract-binding protein 1 ...   134   2e-31
sp|P17225|PTBP1_MOUSE  Polypyrimidine tract-binding protein ...   108   7e-24
sp|Q8R081|HNRPL_MOUSE  Heterogeneous nuclear ribonucleoprote...    58   2e-08
sp|P14866|HNRPL_HUMAN  Heterogeneous nuclear ribonucleoprote...    56   5e-08
sp|Q921F4|HNRLL_MOUSE  Heterogeneous nuclear ribonucleoprote...    55   1e-07
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding
           protein PPTB-1)
          Length = 531

 Score =  139 bits (349), Expect = 6e-33
 Identities = 71/124 (57%), Positives = 87/124 (70%), Gaps = 1/124 (0%)
 Frame = +2

Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
           GVYGDV RVK++FNKK  ALVQ A+  QA  A+ +L+   L GK + + +SK   +QLP 
Sbjct: 359 GVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPR 418

Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
           E   + GLTKDY NS LHRFKKP SKN+QNIFPPSA LHLSNIPP+  E DL  +  S+G
Sbjct: 419 EGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 478

Query: 554 FEIK 565
             +K
Sbjct: 479 GVVK 482
>sp|Q8BHD7|ROD1_MOUSE Regulator of differentiation 1 (Rod1)
          Length = 523

 Score =  138 bits (347), Expect = 1e-32
 Identities = 70/124 (56%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
 Frame = +2

Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
           GVYGDV RVK+MFNKK  ALVQ A+  QA  A+ +L    L+GK +   +SK   +QLP 
Sbjct: 351 GVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPR 410

Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
           E   + GLTKD+SNS LHRFKKP SKN+QNIFPPSA LHLSNIPP+    DL  +   +G
Sbjct: 411 EGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAG 470

Query: 554 FEIK 565
             +K
Sbjct: 471 CSVK 474
>sp|Q9Z118|ROD1_RAT Regulator of differentiation 1 (Rod1)
          Length = 523

 Score =  138 bits (347), Expect = 1e-32
 Identities = 70/124 (56%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
 Frame = +2

Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
           GVYGDV RVK+MFNKK  ALVQ A+  QA  A+ +L    L+GK +   +SK   +QLP 
Sbjct: 351 GVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQAVQLPR 410

Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
           E   + GLTKD+SNS LHRFKKP SKN+QNIFPPSA LHLSNIPP+    DL  +   +G
Sbjct: 411 EGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAG 470

Query: 554 FEIK 565
             +K
Sbjct: 471 CSVK 474
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding
           protein) (PYBP)
          Length = 555

 Score =  137 bits (346), Expect = 1e-32
 Identities = 69/124 (55%), Positives = 87/124 (70%), Gaps = 1/124 (0%)
 Frame = +2

Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
           GVYGDV RVK++FNKK  ALV+ A+  QA  A+ +L+   L GK + + +SK   +QLP 
Sbjct: 383 GVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPR 442

Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
           E   + GLTKDY +S LHRFKKP SKN+QNIFPPSA LHLSNIPP+  E DL  +  S+G
Sbjct: 443 EGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNG 502

Query: 554 FEIK 565
             +K
Sbjct: 503 GVVK 506
>sp|O95758|ROD1_HUMAN Regulator of differentiation 1 (Rod1)
          Length = 521

 Score =  137 bits (345), Expect = 2e-32
 Identities = 70/124 (56%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
 Frame = +2

Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
           GVYGDV RVK+MFNKK  ALVQ A+  QA  A+ +L    L+GK +   +SK   +QLP 
Sbjct: 349 GVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPR 408

Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
           E   + GLTKD+SNS LHRFKKP SKN+QNIFPPSA LHLSNIPP+    DL  +   +G
Sbjct: 409 EGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAG 468

Query: 554 FEIK 565
             +K
Sbjct: 469 CSVK 472
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score =  134 bits (337), Expect = 2e-31
 Identities = 70/124 (56%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
 Frame = +2

Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
           GVY DV RVK++FNKK  ALVQ A+  QA  A+ +L+   L GK + + +SK   +QLP 
Sbjct: 385 GVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPR 444

Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
           E   + GLTKDY NS LHRFKKP SKN+QNIFPPSA LHLSNIPP+  E DL  +  S+G
Sbjct: 445 EGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKILFSSNG 504

Query: 554 FEIK 565
             +K
Sbjct: 505 GIVK 508
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
           ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score =  108 bits (271), Expect = 7e-24
 Identities = 61/123 (49%), Positives = 72/123 (58%)
 Frame = +2

Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
           GVYGDV RVK++FNKK  ALVQ A+  QA        A        H  V  +       
Sbjct: 357 GVYGDVQRVKILFNKKENALVQMADGSQAQLGEPPERAQAAREVSAHYTVQASECAAARE 416

Query: 377 EDANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSGF 556
              + GLTKDY +S L RFKKP SKN+QNIFPPSA LHLSNIPP+  E DL  +  S+G 
Sbjct: 417 GQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGG 475

Query: 557 EIK 565
            +K
Sbjct: 476 VVK 478
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L (hnRNP L)
          Length = 555

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
 Frame = +2

Query: 161 QLSSTCNK-FKCGGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMH 337
           Q    C++ F    +YG+V +VK M +K   A+V+ A+      AI +L+  F++G++M+
Sbjct: 357 QSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMN 416

Query: 338 LHVSKTNVIQLPMEDANHGLT------KDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSN 499
           + VSK   I   M   ++GL       KD+S S  +RF  P       I  PS VLH  N
Sbjct: 417 VCVSKQPAI---MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFN 473

Query: 500 IPPTTGEGDLSEMIRSSG 553
            P    E +  E+    G
Sbjct: 474 APLEVTEENFFEICDELG 491
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L (hnRNP L)
          Length = 558

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
 Frame = +2

Query: 200 VYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPME 379
           +YG+V +VK M +K   A+V+ A+      AI +L+  F++G+++++ VSK   I   M 
Sbjct: 374 LYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAI---MP 430

Query: 380 DANHGLT------KDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMI 541
             ++GL       KD+S S  +RF  P       I  PS VLH  N P    E +  E+ 
Sbjct: 431 GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEIC 490

Query: 542 RSSG 553
              G
Sbjct: 491 DELG 494
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like
          Length = 591

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
 Frame = +2

Query: 161 QLSSTCNK-FKCGGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMH 337
           QL   C++ F    +YG++ +VK M     TALV+  +      A+ +L+   L+GK+++
Sbjct: 393 QLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLN 452

Query: 338 LHVSKTNVIQ----LPMEDANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIP 505
           + VSK + +       +ED      KD++ S  +RF      +   I PPS VLH  N+P
Sbjct: 453 VCVSKQHSVVPSQIFELEDGTSSY-KDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVP 511
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,531,619
Number of Sequences: 369166
Number of extensions: 1274866
Number of successful extensions: 2937
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2927
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)