Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_G24
(565 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein ... 139 6e-33
sp|Q8BHD7|ROD1_MOUSE Regulator of differentiation 1 (Rod1) 138 1e-32
sp|Q9Z118|ROD1_RAT Regulator of differentiation 1 (Rod1) 138 1e-32
sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 ... 137 1e-32
sp|O95758|ROD1_HUMAN Regulator of differentiation 1 (Rod1) 137 2e-32
sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 ... 134 2e-31
sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein ... 108 7e-24
sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprote... 58 2e-08
sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprote... 56 5e-08
sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprote... 55 1e-07
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
ribonucleoprotein I) (hnRNP I) (57 kDa RNA-binding
protein PPTB-1)
Length = 531
Score = 139 bits (349), Expect = 6e-33
Identities = 71/124 (57%), Positives = 87/124 (70%), Gaps = 1/124 (0%)
Frame = +2
Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
GVYGDV RVK++FNKK ALVQ A+ QA A+ +L+ L GK + + +SK +QLP
Sbjct: 359 GVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPR 418
Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
E + GLTKDY NS LHRFKKP SKN+QNIFPPSA LHLSNIPP+ E DL + S+G
Sbjct: 419 EGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 478
Query: 554 FEIK 565
+K
Sbjct: 479 GVVK 482
>sp|Q8BHD7|ROD1_MOUSE Regulator of differentiation 1 (Rod1)
Length = 523
Score = 138 bits (347), Expect = 1e-32
Identities = 70/124 (56%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Frame = +2
Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
GVYGDV RVK+MFNKK ALVQ A+ QA A+ +L L+GK + +SK +QLP
Sbjct: 351 GVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPR 410
Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
E + GLTKD+SNS LHRFKKP SKN+QNIFPPSA LHLSNIPP+ DL + +G
Sbjct: 411 EGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAG 470
Query: 554 FEIK 565
+K
Sbjct: 471 CSVK 474
>sp|Q9Z118|ROD1_RAT Regulator of differentiation 1 (Rod1)
Length = 523
Score = 138 bits (347), Expect = 1e-32
Identities = 70/124 (56%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Frame = +2
Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
GVYGDV RVK+MFNKK ALVQ A+ QA A+ +L L+GK + +SK +QLP
Sbjct: 351 GVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQAVQLPR 410
Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
E + GLTKD+SNS LHRFKKP SKN+QNIFPPSA LHLSNIPP+ DL + +G
Sbjct: 411 EGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEAG 470
Query: 554 FEIK 565
+K
Sbjct: 471 CSVK 474
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding
protein) (PYBP)
Length = 555
Score = 137 bits (346), Expect = 1e-32
Identities = 69/124 (55%), Positives = 87/124 (70%), Gaps = 1/124 (0%)
Frame = +2
Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
GVYGDV RVK++FNKK ALV+ A+ QA A+ +L+ L GK + + +SK +QLP
Sbjct: 383 GVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPR 442
Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
E + GLTKDY +S LHRFKKP SKN+QNIFPPSA LHLSNIPP+ E DL + S+G
Sbjct: 443 EGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNG 502
Query: 554 FEIK 565
+K
Sbjct: 503 GVVK 506
>sp|O95758|ROD1_HUMAN Regulator of differentiation 1 (Rod1)
Length = 521
Score = 137 bits (345), Expect = 2e-32
Identities = 70/124 (56%), Positives = 85/124 (68%), Gaps = 1/124 (0%)
Frame = +2
Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
GVYGDV RVK+MFNKK ALVQ A+ QA A+ +L L+GK + +SK +QLP
Sbjct: 349 GVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPR 408
Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
E + GLTKD+SNS LHRFKKP SKN+QNIFPPSA LHLSNIPP+ DL + +G
Sbjct: 409 EGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAG 468
Query: 554 FEIK 565
+K
Sbjct: 469 CSVK 472
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
ribonucleoprotein I) (hnRNP I)
Length = 557
Score = 134 bits (337), Expect = 2e-31
Identities = 70/124 (56%), Positives = 86/124 (69%), Gaps = 1/124 (0%)
Frame = +2
Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
GVY DV RVK++FNKK ALVQ A+ QA A+ +L+ L GK + + +SK +QLP
Sbjct: 385 GVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQLPR 444
Query: 377 E-DANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSG 553
E + GLTKDY NS LHRFKKP SKN+QNIFPPSA LHLSNIPP+ E DL + S+G
Sbjct: 445 EGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKILFSSNG 504
Query: 554 FEIK 565
+K
Sbjct: 505 GIVK 508
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 (PTB) (Heterogeneous nuclear
ribonucleoprotein I) (hnRNP I)
Length = 527
Score = 108 bits (271), Expect = 7e-24
Identities = 61/123 (49%), Positives = 72/123 (58%)
Frame = +2
Query: 197 GVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPM 376
GVYGDV RVK++FNKK ALVQ A+ QA A H V +
Sbjct: 357 GVYGDVQRVKILFNKKENALVQMADGSQAQLGEPPERAQAAREVSAHYTVQASECAAARE 416
Query: 377 EDANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMIRSSGF 556
+ GLTKDY +S L RFKKP SKN+QNIFPPSA LHLSNIPP+ E DL + S+G
Sbjct: 417 GQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNGG 475
Query: 557 EIK 565
+K
Sbjct: 476 VVK 478
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L (hnRNP L)
Length = 555
Score = 57.8 bits (138), Expect = 2e-08
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Frame = +2
Query: 161 QLSSTCNK-FKCGGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMH 337
Q C++ F +YG+V +VK M +K A+V+ A+ AI +L+ F++G++M+
Sbjct: 357 QSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMN 416
Query: 338 LHVSKTNVIQLPMEDANHGLT------KDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSN 499
+ VSK I M ++GL KD+S S +RF P I PS VLH N
Sbjct: 417 VCVSKQPAI---MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFN 473
Query: 500 IPPTTGEGDLSEMIRSSG 553
P E + E+ G
Sbjct: 474 APLEVTEENFFEICDELG 491
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L (hnRNP L)
Length = 558
Score = 56.2 bits (134), Expect = 5e-08
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Frame = +2
Query: 200 VYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMHLHVSKTNVIQLPME 379
+YG+V +VK M +K A+V+ A+ AI +L+ F++G+++++ VSK I M
Sbjct: 374 LYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAI---MP 430
Query: 380 DANHGLT------KDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIPPTTGEGDLSEMI 541
++GL KD+S S +RF P I PS VLH N P E + E+
Sbjct: 431 GQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEIC 490
Query: 542 RSSG 553
G
Sbjct: 491 DELG 494
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like
Length = 591
Score = 55.1 bits (131), Expect = 1e-07
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Frame = +2
Query: 161 QLSSTCNK-FKCGGVYGDVMRVKVMFNKKNTALVQFANHQQAMTAIRNLDACFLWGKQMH 337
QL C++ F +YG++ +VK M TALV+ + A+ +L+ L+GK+++
Sbjct: 393 QLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLN 452
Query: 338 LHVSKTNVIQ----LPMEDANHGLTKDYSNSTLHRFKKPNSKNYQNIFPPSAVLHLSNIP 505
+ VSK + + +ED KD++ S +RF + I PPS VLH N+P
Sbjct: 453 VCVSKQHSVVPSQIFELEDGTSSY-KDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVP 511
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,531,619
Number of Sequences: 369166
Number of extensions: 1274866
Number of successful extensions: 2937
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2927
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)