Planaria EST Database


DrC_01657

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01657
         (824 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JM53|PDCD8_RAT  Programmed cell death protein 8, mitoch...    87   7e-17
sp|Q9Z0X1|PDCD8_MOUSE  Programmed cell death protein 8, mito...    87   7e-17
sp|O95831|PDCD8_HUMAN  Programmed cell death protein 8, mito...    86   9e-17
sp|Q9VQ79|PDCD8_DROME  Putative oxidoreductase CG7263, mitoc...    86   9e-17
sp|O51597|SECF_BORBU  Protein-export membrane protein secF         33   0.95 
sp|Q9WTV1|CH3L1_RAT  Chitinase-3-like protein 1 precursor (C...    32   2.8  
sp|P58145|ROAA_ASTLO  Ribosomal operon-associated A protein ...    30   6.2  
sp|Q02137|ILVB_LACLA  Acetolactate synthase large subunit (A...    30   6.2  
sp|Q9WZH8|SYC_THEMA  Cysteinyl-tRNA synthetase (Cysteine--tR...    30   8.1  
sp|Q7VD64|TAL_PROMA  Transaldolase                                 30   8.1  
>sp|Q9JM53|PDCD8_RAT Programmed cell death protein 8, mitochondrial precursor
           (Apoptosis-inducing factor)
          Length = 612

 Score = 86.7 bits (213), Expect = 7e-17
 Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 19/228 (8%)
 Frame = +2

Query: 68  FLVNAELLAREGIYVAGDSCSFFDVNLGRRRVEHWNHSEESGSIAGHNMVAYVLKSVDAS 247
           F VNAEL AR  I+VAGD+  F+D+ LGRRRVEH +H+  SG +AG NM           
Sbjct: 420 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA------- 472

Query: 248 YFDSNSPKFVDNSNLIYDIFKPRIYNFQSSFAFKFNIYNSLEAIGLTDSKLET-KTFVAT 424
                               KP  Y  QS F          EAIGL DS L T   F   
Sbjct: 473 --------------------KP--YWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKA 510

Query: 425 DFYDDDFNIVESDEKVVEKALKPKTEHDPLDMP------------------GVVFYLKNK 550
              D+  +  E     +    + ++E   + +P                  GV+FYL++K
Sbjct: 511 TAQDNPKSATEQSGTGIRSESETESEASEITIPPSDPAVPQVPVEGEDYGKGVIFYLRDK 570

Query: 551 EIVGVLLWNVDDDIIIESDFPSPLRINVARKILAQHPKIQSNTDLIKL 694
            +VG++LWNV +            R+ +ARKI+    + +   ++ KL
Sbjct: 571 VVVGIVLWNVFN------------RMPIARKIIKDGEQHEDLNEVAKL 606
>sp|Q9Z0X1|PDCD8_MOUSE Programmed cell death protein 8, mitochondrial precursor
           (Apoptosis-inducing factor)
          Length = 612

 Score = 86.7 bits (213), Expect = 7e-17
 Identities = 69/228 (30%), Positives = 98/228 (42%), Gaps = 19/228 (8%)
 Frame = +2

Query: 68  FLVNAELLAREGIYVAGDSCSFFDVNLGRRRVEHWNHSEESGSIAGHNMVAYVLKSVDAS 247
           F VNAEL AR  I+VAGD+  F+D+ LGRRRVEH +H+  SG +AG NM           
Sbjct: 420 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA------- 472

Query: 248 YFDSNSPKFVDNSNLIYDIFKPRIYNFQSSFAFKFNIYNSLEAIGLTDSKLET-KTFVAT 424
                               KP  Y  QS F          EAIGL DS L T   F   
Sbjct: 473 --------------------KP--YWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKA 510

Query: 425 DFYDDDFNIVESDEKVVEKALKPKTEHDPLDMP------------------GVVFYLKNK 550
              D+  +  E     +    + ++E   + +P                  GV+FYL++K
Sbjct: 511 TAQDNPKSATEQSGTGIRSESETESEASEITIPPSAPAVPQVPVEGEDYGKGVIFYLRDK 570

Query: 551 EIVGVLLWNVDDDIIIESDFPSPLRINVARKILAQHPKIQSNTDLIKL 694
            +VG++LWNV +            R+ +ARKI+    + +   ++ KL
Sbjct: 571 VVVGIVLWNVFN------------RMPIARKIIKDGEQHEDLNEVAKL 606
>sp|O95831|PDCD8_HUMAN Programmed cell death protein 8, mitochondrial precursor
           (Apoptosis-inducing factor)
          Length = 613

 Score = 86.3 bits (212), Expect = 9e-17
 Identities = 68/228 (29%), Positives = 98/228 (42%), Gaps = 19/228 (8%)
 Frame = +2

Query: 68  FLVNAELLAREGIYVAGDSCSFFDVNLGRRRVEHWNHSEESGSIAGHNMVAYVLKSVDAS 247
           F VNAEL AR  I+VAGD+  F+D+ LGRRRVEH +H+  SG +AG NM           
Sbjct: 421 FRVNAELQARSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA------- 473

Query: 248 YFDSNSPKFVDNSNLIYDIFKPRIYNFQSSFAFKFNIYNSLEAIGLTDSKLET-KTFVAT 424
                               KP  Y  QS F          EAIGL DS L T   F   
Sbjct: 474 --------------------KP--YWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKA 511

Query: 425 DFYDDDFNIVESDEKVVEKALKPKTEHDPLDMP------------------GVVFYLKNK 550
              D+  +  E     +    + ++E   + +P                  GV+FYL++K
Sbjct: 512 TAQDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDK 571

Query: 551 EIVGVLLWNVDDDIIIESDFPSPLRINVARKILAQHPKIQSNTDLIKL 694
            +VG++LWN+ +            R+ +ARKI+    + +   ++ KL
Sbjct: 572 VVVGIVLWNIFN------------RMPIARKIIKDGEQHEDLNEVAKL 607
>sp|Q9VQ79|PDCD8_DROME Putative oxidoreductase CG7263, mitochondrial precursor
          Length = 739

 Score = 86.3 bits (212), Expect = 9e-17
 Identities = 72/229 (31%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
 Frame = +2

Query: 68   FLVNAELLAREGIYVAGDSCSFFDVNLGRRRVEHWNHSEESGSIAGHNMVAYVLKSVDAS 247
            F+VNAEL AR  +YVAGD+  FFD  LGRRRVEH +HS  SG +AG NM           
Sbjct: 547  FVVNAELEARRNLYVAGDASCFFDPLLGRRRVEHHDHSVVSGRLAGENMTG--------- 597

Query: 248  YFDSNSPKFVDNSNLIYDIFKPRIYNFQSSFAFKFNIYNSLEAIGLTDSKLETKTFVA-- 421
                                  + Y  QS F          E IGL DS L T    A  
Sbjct: 598  --------------------AKKPYQHQSMFWSDLGPEIGYEGIGLVDSSLPTVGVFALP 637

Query: 422  TDFYDDDFNIVESDEKVVEKALKPKTEHDPLDM------------------PGVVFYLKN 547
            ++       + ES +  V +     ++    D                    GV+FYLKN
Sbjct: 638  SESATRVDQLSESSDSDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKN 697

Query: 548  KEIVGVLLWNVDDDIIIESDFPSPLRINVARKILAQHPKIQSNTDLIKL 694
             +IVG+LLWN+ +            RI +AR I+ Q+ K     ++ KL
Sbjct: 698  DKIVGILLWNLFN------------RIGLARTIINQNKKYDDLNEVAKL 734
>sp|O51597|SECF_BORBU Protein-export membrane protein secF
          Length = 299

 Score = 33.1 bits (74), Expect = 0.95
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 12/159 (7%)
 Frame = +2

Query: 290 LIYDIFKPRIYNFQSSFAFKFNIYNSLEAIGLTDSKLET------KTFVATDFYDDDFN- 448
           LIY  F    YN+   F+ + NI  S+E   + +++++       KT      +  D N 
Sbjct: 26  LIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKENEIKKIFSPIYKTLDVNSIFSPDQNK 85

Query: 449 -----IVESDEKVVEKALKPKTEHDPLDMPGVVFYLKNKEIVGVLLWNVDDDIIIESDFP 613
                +V+SD  V++ A K + +   LD        K KE     +  V D   I+S F 
Sbjct: 86  SEFSIMVKSD--VIDYAFKTEVQKTILD--------KLKETFDANI-EVLDSYFIDSSFS 134

Query: 614 SPLRINVARKILAQHPKIQSNTDLIKLASEFDLSFYVNS 730
           S LRI     +L     I     LI +   F LS+ + S
Sbjct: 135 STLRIRSIFLVLGTFILI-----LIYITLRFKLSYAIAS 168
>sp|Q9WTV1|CH3L1_RAT Chitinase-3-like protein 1 precursor (Cartilage glycoprotein 39)
           (GP-39)
          Length = 381

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 506 DPLDMPGVVFYLKNKEIVGVLLWNVDDD 589
           DP  +   V YLKNK++ G ++W VD D
Sbjct: 328 DPESVKNKVKYLKNKQLAGAMVWAVDLD 355
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
          Length = 519

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 284 SNLIYDIFKPRIYNFQSSFAFKFNIYNSLEAIGLTDSKLETKTFVATDFYDDDFN 448
           +NL+  +  P +     +F F FN Y +L  I L   K+  K F+   ++  +FN
Sbjct: 126 NNLVKFVMYPFLELKTENFVFNFNFYTNLYDIFLNFKKILLKNFMKLYYFTINFN 180
>sp|Q02137|ILVB_LACLA Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid
           synthase large subunit) (ALS)
          Length = 575

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 23/88 (26%), Positives = 43/88 (48%)
 Frame = +2

Query: 329 QSSFAFKFNIYNSLEAIGLTDSKLETKTFVATDFYDDDFNIVESDEKVVEKALKPKTEHD 508
           QS F  + N     EA G+   KL+    +A     DD  I+  DE ++ + L  K+EH 
Sbjct: 493 QSVFDVEPNFQLLAEAYGIKHVKLDNPKTLA-----DDLKIITEDEPMLIEVLISKSEH- 546

Query: 509 PLDMPGVVFYLKNKEIVGVLLWNVDDDI 592
              +P +   L + E++G+   + ++++
Sbjct: 547 --VLPMIPAGLHSDEMIGLHFTDENEEV 572
>sp|Q9WZH8|SYC_THEMA Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) (CysRS)
          Length = 460

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
 Frame = +2

Query: 359 YNSLEAIGLTDSKLETKTFVATDFYDDDFNIVESDEKVVEKALKPKTEHDPLDMPGVVFY 538
           +    A+G+  +    +T   TDF +D   IVE  EK+VEK    +TE       GV F 
Sbjct: 96  WRDAHALGIRPANFHPRT---TDFVED---IVEIIEKLVEKGFAYQTE------TGVYFD 143

Query: 539 LKNKEIVGVLLWNVDDDII------IESDFPSPLRINVARKILAQHP 661
           ++  E  G L     +D+I      ++    SPL  ++ +K     P
Sbjct: 144 VRKFEKYGELSKKKIEDLIAGARVEVDETKKSPLDFSLWKKAKPGEP 190
>sp|Q7VD64|TAL_PROMA Transaldolase
          Length = 335

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
 Frame = +2

Query: 440 DFNIVESDEKVVEKALKPKTEHDPLDMPGVVFYLKNKEIVGVLLWNVDDDIIIESDFPSP 619
           D ++  S ++V   A   +   + LD   V F    KEI+ ++   V  ++     F + 
Sbjct: 53  DKSLQASRQRVGSFASAKEVVDEALDEVCVTF---GKEILKIIPGRVSTEVDARLSFNTQ 109

Query: 620 LRINVARKILAQHPKIQSNTD--LIKLASEFD 709
             IN ARKI+  + K+  + +  LIK+AS ++
Sbjct: 110 ATINKARKIIDLYKKVDISKERVLIKVASTWE 141
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,077,498
Number of Sequences: 369166
Number of extensions: 1544153
Number of successful extensions: 4593
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4591
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)