Planaria EST Database


DrC_01651

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01651
         (590 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K4G1|LTBP4_MOUSE  Latent transforming growth factor bet...    31   2.0  
sp|Q92337|ABC1_SCHPO  ATP-binding cassette transporter abc1        31   2.0  
sp|Q92KF8|ATE_RHIME  Putative arginyl-tRNA--protein transfer...    30   4.5  
sp|Q02858|TIE2_MOUSE  Angiopoietin-1 receptor precursor (Tyr...    29   7.7  
sp|Q06807|TIE2_BOVIN  Angiopoietin-1 receptor precursor (Tyr...    29   7.7  
sp|Q02763|TIE2_HUMAN  Angiopoietin-1 receptor precursor (Tyr...    29   7.7  
sp|Q74ZD5|SEY1_ASHGO  Protein SEY1                                 29   7.7  
>sp|Q8K4G1|LTBP4_MOUSE Latent transforming growth factor beta binding protein 4 precursor
           (LTBP-4)
          Length = 1666

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 270 DQLPHQII*GKNECFRFPIARKGSFRCRVCEAGRHSDQGRLGD 398
           D+  +++     EC   P    GSF+CR C  G H  +GR  D
Sbjct: 839 DECENRLACPGQECVNSP----GSFQCRACPVGHHLHRGRCTD 877
>sp|Q92337|ABC1_SCHPO ATP-binding cassette transporter abc1
          Length = 1427

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 88   PIFVVVGSTIGSCLIIRYFDKEFIAEPCGIAF 183
            P+F ++G T+G   +IR F KE I E   +AF
Sbjct: 1037 PVFTMLGETLGGITVIRAFKKEKIFEHENMAF 1068
>sp|Q92KF8|ATE_RHIME Putative arginyl-tRNA--protein transferase (R-transferase)
           (Arginyltransferase)
          Length = 259

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +1

Query: 151 EFIAEPCGIAFSLLQRYAVCEQELGTLSSFKPI---MNYFDTGISYHTKLFKAKMNVFG 318
           E+ AEP    ++L +RY  C  + G +S    +   M   DT +  HTK+ + ++ V G
Sbjct: 99  EYPAEPSSEQYNLFRRYLDCRHQKGGMSDMSVLDYAMMVEDTHV--HTKIIEYRLRVEG 155
>sp|Q02858|TIE2_MOUSE Angiopoietin-1 receptor precursor (Tyrosine-protein kinase receptor
            TIE-2) (Tyrosine-protein kinase receptor TEK) (P140 TEK)
            (Tunica interna endothelial cell kinase) (HYK) (STK1)
          Length = 1122

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 236  LLSVPNSCSHTAYLCSKENAIPHGSAMNSLSKYLIIKQDP 117
            ++++  +C H  YL       PHG+ ++ L K  +++ DP
Sbjct: 883  IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 922
>sp|Q06807|TIE2_BOVIN Angiopoietin-1 receptor precursor (Tyrosine-protein kinase receptor
            TIE-2)
          Length = 1125

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 236  LLSVPNSCSHTAYLCSKENAIPHGSAMNSLSKYLIIKQDP 117
            ++++  +C H  YL       PHG+ ++ L K  +++ DP
Sbjct: 886  IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 925
>sp|Q02763|TIE2_HUMAN Angiopoietin-1 receptor precursor (Tyrosine-protein kinase receptor
            TIE-2) (Tyrosine-protein kinase receptor TEK) (P140 TEK)
            (Tunica interna endothelial cell kinase) (CD202b antigen)
          Length = 1124

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 236  LLSVPNSCSHTAYLCSKENAIPHGSAMNSLSKYLIIKQDP 117
            ++++  +C H  YL       PHG+ ++ L K  +++ DP
Sbjct: 885  IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 924
>sp|Q74ZD5|SEY1_ASHGO Protein SEY1
          Length = 791

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 226 TLSSFKPIMNYFDTGISYHTKLFKAKMNVFGSQSRGK 336
           TL  FK  +   D G+ YH       ++VFGSQS GK
Sbjct: 26  TLEYFKRCIGERDVGLDYHV------ISVFGSQSSGK 56
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,173,652
Number of Sequences: 369166
Number of extensions: 1210589
Number of successful extensions: 3003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3003
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)