Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_D23
(590 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K4G1|LTBP4_MOUSE Latent transforming growth factor bet... 31 2.0
sp|Q92337|ABC1_SCHPO ATP-binding cassette transporter abc1 31 2.0
sp|Q92KF8|ATE_RHIME Putative arginyl-tRNA--protein transfer... 30 4.5
sp|Q02858|TIE2_MOUSE Angiopoietin-1 receptor precursor (Tyr... 29 7.7
sp|Q06807|TIE2_BOVIN Angiopoietin-1 receptor precursor (Tyr... 29 7.7
sp|Q02763|TIE2_HUMAN Angiopoietin-1 receptor precursor (Tyr... 29 7.7
sp|Q74ZD5|SEY1_ASHGO Protein SEY1 29 7.7
>sp|Q8K4G1|LTBP4_MOUSE Latent transforming growth factor beta binding protein 4 precursor
(LTBP-4)
Length = 1666
Score = 31.2 bits (69), Expect = 2.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 270 DQLPHQII*GKNECFRFPIARKGSFRCRVCEAGRHSDQGRLGD 398
D+ +++ EC P GSF+CR C G H +GR D
Sbjct: 839 DECENRLACPGQECVNSP----GSFQCRACPVGHHLHRGRCTD 877
>sp|Q92337|ABC1_SCHPO ATP-binding cassette transporter abc1
Length = 1427
Score = 31.2 bits (69), Expect = 2.0
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 88 PIFVVVGSTIGSCLIIRYFDKEFIAEPCGIAF 183
P+F ++G T+G +IR F KE I E +AF
Sbjct: 1037 PVFTMLGETLGGITVIRAFKKEKIFEHENMAF 1068
>sp|Q92KF8|ATE_RHIME Putative arginyl-tRNA--protein transferase (R-transferase)
(Arginyltransferase)
Length = 259
Score = 30.0 bits (66), Expect = 4.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 151 EFIAEPCGIAFSLLQRYAVCEQELGTLSSFKPI---MNYFDTGISYHTKLFKAKMNVFG 318
E+ AEP ++L +RY C + G +S + M DT + HTK+ + ++ V G
Sbjct: 99 EYPAEPSSEQYNLFRRYLDCRHQKGGMSDMSVLDYAMMVEDTHV--HTKIIEYRLRVEG 155
>sp|Q02858|TIE2_MOUSE Angiopoietin-1 receptor precursor (Tyrosine-protein kinase receptor
TIE-2) (Tyrosine-protein kinase receptor TEK) (P140 TEK)
(Tunica interna endothelial cell kinase) (HYK) (STK1)
Length = 1122
Score = 29.3 bits (64), Expect = 7.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 236 LLSVPNSCSHTAYLCSKENAIPHGSAMNSLSKYLIIKQDP 117
++++ +C H YL PHG+ ++ L K +++ DP
Sbjct: 883 IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 922
>sp|Q06807|TIE2_BOVIN Angiopoietin-1 receptor precursor (Tyrosine-protein kinase receptor
TIE-2)
Length = 1125
Score = 29.3 bits (64), Expect = 7.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 236 LLSVPNSCSHTAYLCSKENAIPHGSAMNSLSKYLIIKQDP 117
++++ +C H YL PHG+ ++ L K +++ DP
Sbjct: 886 IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 925
>sp|Q02763|TIE2_HUMAN Angiopoietin-1 receptor precursor (Tyrosine-protein kinase receptor
TIE-2) (Tyrosine-protein kinase receptor TEK) (P140 TEK)
(Tunica interna endothelial cell kinase) (CD202b antigen)
Length = 1124
Score = 29.3 bits (64), Expect = 7.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 236 LLSVPNSCSHTAYLCSKENAIPHGSAMNSLSKYLIIKQDP 117
++++ +C H YL PHG+ ++ L K +++ DP
Sbjct: 885 IINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDP 924
>sp|Q74ZD5|SEY1_ASHGO Protein SEY1
Length = 791
Score = 29.3 bits (64), Expect = 7.7
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 226 TLSSFKPIMNYFDTGISYHTKLFKAKMNVFGSQSRGK 336
TL FK + D G+ YH ++VFGSQS GK
Sbjct: 26 TLEYFKRCIGERDVGLDYHV------ISVFGSQSSGK 56
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,173,652
Number of Sequences: 369166
Number of extensions: 1210589
Number of successful extensions: 3003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3003
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)