Planaria EST Database


DrC_01649

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01649
         (296 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42107|YXAH_BACSU  Hypothetical protein yxaH                    30   1.7  
sp|O15027|K0310_HUMAN  Protein KIAA0310                            29   2.9  
>sp|P42107|YXAH_BACSU Hypothetical protein yxaH
          Length = 402

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 212 SLSQMKKNPIQYFF-SVNQFSMRLLFSVQTMEEKLHEP 102
           S   ++ NP+ YFF S+  FSM LL +       LHEP
Sbjct: 214 SNGMLRINPLNYFFASIPYFSMFLLGAAAAKSRYLHEP 251
>sp|O15027|K0310_HUMAN Protein KIAA0310
          Length = 2179

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 2    NNADVVLADEVSIDEQKANVLWYFLMILELFQGTVRG 112
            N A   L +E  ID++ A++LW F+++L    GTV G
Sbjct: 1339 NKAMKCLQNENLIDKESASLLWNFIVLLCRQNGTVVG 1375
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,762,737
Number of Sequences: 369166
Number of extensions: 502230
Number of successful extensions: 1292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)