Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01649
(296 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42107|YXAH_BACSU Hypothetical protein yxaH 30 1.7
sp|O15027|K0310_HUMAN Protein KIAA0310 29 2.9
>sp|P42107|YXAH_BACSU Hypothetical protein yxaH
Length = 402
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 212 SLSQMKKNPIQYFF-SVNQFSMRLLFSVQTMEEKLHEP 102
S ++ NP+ YFF S+ FSM LL + LHEP
Sbjct: 214 SNGMLRINPLNYFFASIPYFSMFLLGAAAAKSRYLHEP 251
>sp|O15027|K0310_HUMAN Protein KIAA0310
Length = 2179
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 2 NNADVVLADEVSIDEQKANVLWYFLMILELFQGTVRG 112
N A L +E ID++ A++LW F+++L GTV G
Sbjct: 1339 NKAMKCLQNENLIDKESASLLWNFIVLLCRQNGTVVG 1375
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,762,737
Number of Sequences: 369166
Number of extensions: 502230
Number of successful extensions: 1292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)