Planaria EST Database


DrC_01646

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01646
         (204 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NVF5|DEOC2_STAAW  Deoxyribose-phosphate aldolase 2 (Pho...    28   8.6  
sp|Q8NYR1|DEOC1_STAAW  Deoxyribose-phosphate aldolase 1 (Pho...    28   8.6  
sp|Q6GET8|DEOC2_STAAR  Deoxyribose-phosphate aldolase 2 (Pho...    28   8.6  
sp|Q6GKG7|DEOC1_STAAR  Deoxyribose-phosphate aldolase 1 (Pho...    28   8.6  
sp|P99174|DEOC2_STAAN  Deoxyribose-phosphate aldolase 2 (Pho...    28   8.6  
sp|Q5HJN0|DEOC1_STAAC  Deoxyribose-phosphate aldolase 1 (Pho...    28   8.6  
>sp|Q8NVF5|DEOC2_STAAW Deoxyribose-phosphate aldolase 2 (Phosphodeoxyriboaldolase 2)
           (Deoxyriboaldolase 2) (DERA 2)
 sp|Q6G7H3|DEOC2_STAAS Deoxyribose-phosphate aldolase 2 (Phosphodeoxyriboaldolase 2)
           (Deoxyriboaldolase 2) (DERA 2)
          Length = 220

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
           G  A+ V LMK+     VEV  +   +NL  FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
>sp|Q8NYR1|DEOC1_STAAW Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
           (Deoxyriboaldolase 1) (DERA 1)
 sp|Q6GCY6|DEOC1_STAAS Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
           (Deoxyriboaldolase 1) (DERA 1)
          Length = 220

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
           G  A+ V LMK+     VEV  +   +NL  FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
>sp|Q6GET8|DEOC2_STAAR Deoxyribose-phosphate aldolase 2 (Phosphodeoxyriboaldolase 2)
           (Deoxyriboaldolase 2) (DERA 2)
          Length = 220

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
           G  A+ V LMK+     VEV  +   +NL  FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
>sp|Q6GKG7|DEOC1_STAAR Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
           (Deoxyriboaldolase 1) (DERA 1)
          Length = 220

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
           G  A+ V LMK+     VEV  +   +NL  FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
>sp|P99174|DEOC2_STAAN Deoxyribose-phosphate aldolase 2 (Phosphodeoxyriboaldolase 2)
           (Deoxyriboaldolase 2) (DERA 2)
 sp|P61084|DEOC2_STAAM Deoxyribose-phosphate aldolase 2 (Phosphodeoxyriboaldolase 2)
           (Deoxyriboaldolase 2) (DERA 2)
          Length = 220

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
           G  A+ V LMK+     VEV  +   +NL  FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
>sp|Q5HJN0|DEOC1_STAAC Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
           (Deoxyriboaldolase 1) (DERA 1)
 sp|P99102|DEOC1_STAAN Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
           (Deoxyriboaldolase 1) (DERA 1)
 sp|P61108|DEOC1_STAAM Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
           (Deoxyriboaldolase 1) (DERA 1)
          Length = 220

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
           G  A+ V LMK+     VEV  +   +NL  FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,251,830
Number of Sequences: 369166
Number of extensions: 248733
Number of successful extensions: 458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 68,354,980
effective HSP length: 39
effective length of database: 61,150,315
effective search space used: 1712208820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)