Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_D01
(204 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8NVF5|DEOC2_STAAW Deoxyribose-phosphate aldolase 2 (Pho... 28 8.6
sp|Q8NYR1|DEOC1_STAAW Deoxyribose-phosphate aldolase 1 (Pho... 28 8.6
sp|Q6GET8|DEOC2_STAAR Deoxyribose-phosphate aldolase 2 (Pho... 28 8.6
sp|Q6GKG7|DEOC1_STAAR Deoxyribose-phosphate aldolase 1 (Pho... 28 8.6
sp|P99174|DEOC2_STAAN Deoxyribose-phosphate aldolase 2 (Pho... 28 8.6
sp|Q5HJN0|DEOC1_STAAC Deoxyribose-phosphate aldolase 1 (Pho... 28 8.6
>sp|Q8NVF5|DEOC2_STAAW Deoxyribose-phosphate aldolase 2 (Phosphodeoxyriboaldolase 2)
(Deoxyriboaldolase 2) (DERA 2)
sp|Q6G7H3|DEOC2_STAAS Deoxyribose-phosphate aldolase 2 (Phosphodeoxyriboaldolase 2)
(Deoxyriboaldolase 2) (DERA 2)
Length = 220
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 3 GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
G A+ V LMK+ VEV + +NL FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
>sp|Q8NYR1|DEOC1_STAAW Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
(Deoxyriboaldolase 1) (DERA 1)
sp|Q6GCY6|DEOC1_STAAS Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
(Deoxyriboaldolase 1) (DERA 1)
Length = 220
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 3 GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
G A+ V LMK+ VEV + +NL FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
>sp|Q6GET8|DEOC2_STAAR Deoxyribose-phosphate aldolase 2 (Phosphodeoxyriboaldolase 2)
(Deoxyriboaldolase 2) (DERA 2)
Length = 220
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 3 GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
G A+ V LMK+ VEV + +NL FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
>sp|Q6GKG7|DEOC1_STAAR Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
(Deoxyriboaldolase 1) (DERA 1)
Length = 220
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 3 GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
G A+ V LMK+ VEV + +NL FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
>sp|P99174|DEOC2_STAAN Deoxyribose-phosphate aldolase 2 (Phosphodeoxyriboaldolase 2)
(Deoxyriboaldolase 2) (DERA 2)
sp|P61084|DEOC2_STAAM Deoxyribose-phosphate aldolase 2 (Phosphodeoxyriboaldolase 2)
(Deoxyriboaldolase 2) (DERA 2)
Length = 220
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 3 GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
G A+ V LMK+ VEV + +NL FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
>sp|Q5HJN0|DEOC1_STAAC Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
(Deoxyriboaldolase 1) (DERA 1)
sp|P99102|DEOC1_STAAN Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
(Deoxyriboaldolase 1) (DERA 1)
sp|P61108|DEOC1_STAAM Deoxyribose-phosphate aldolase 1 (Phosphodeoxyriboaldolase 1)
(Deoxyriboaldolase 1) (DERA 1)
Length = 220
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 3 GTRAQSVPLMKENATESVEVGETSNSQNLNPFNEV 107
G A+ V LMK+ VEV + +NL FN++
Sbjct: 160 GATAEDVKLMKDTVGADVEVKASGGVRNLEDFNKM 194
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,251,830
Number of Sequences: 369166
Number of extensions: 248733
Number of successful extensions: 458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 68,354,980
effective HSP length: 39
effective length of database: 61,150,315
effective search space used: 1712208820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)