Planaria EST Database


DrC_01645

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01645
         (532 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P76273|YEBU_ECOLI  Hypothetical protein yebU                    32   0.96 
sp|Q58865|YE70_METJA  Hypothetical protein MJ1470                  29   8.1  
sp|O00874|DPOLA_LEIDO  DNA polymerase alpha catalytic subunit      29   8.1  
>sp|P76273|YEBU_ECOLI Hypothetical protein yebU
          Length = 479

 Score = 32.0 bits (71), Expect = 0.96
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +3

Query: 315 WDD---IWE*IANLWVFPLSIAIINGKI-FDEMSECFAINPNKGYQ 440
           WD+   +W+    LW+FP+ I  + GK+ F  +    A   NKGY+
Sbjct: 351 WDENLRLWQRDKELWLFPVGIEALIGKVRFSRLGIKLAETHNKGYR 396
>sp|Q58865|YE70_METJA Hypothetical protein MJ1470
          Length = 624

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 277 IEFKKQIYLQKCIGMIFGNELQIYG 351
           I FK+ +Y+ K  GM +G+ + +YG
Sbjct: 166 IYFKENVYIPKITGMKYGDSINLYG 190
>sp|O00874|DPOLA_LEIDO DNA polymerase alpha catalytic subunit
          Length = 1339

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 248  ITEHIYKFQWTFLSEPTSLSCISVAPISEEDAET 147
            + EHI  F    LSE   ++C + A + EE+AET
Sbjct: 1117 LCEHIQGFSNAQLSEAMGIACHTGAKLEEEEAET 1150
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,647,533
Number of Sequences: 369166
Number of extensions: 1280379
Number of successful extensions: 3729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3729
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)