Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C23
(532 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P76273|YEBU_ECOLI Hypothetical protein yebU 32 0.96
sp|Q58865|YE70_METJA Hypothetical protein MJ1470 29 8.1
sp|O00874|DPOLA_LEIDO DNA polymerase alpha catalytic subunit 29 8.1
>sp|P76273|YEBU_ECOLI Hypothetical protein yebU
Length = 479
Score = 32.0 bits (71), Expect = 0.96
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = +3
Query: 315 WDD---IWE*IANLWVFPLSIAIINGKI-FDEMSECFAINPNKGYQ 440
WD+ +W+ LW+FP+ I + GK+ F + A NKGY+
Sbjct: 351 WDENLRLWQRDKELWLFPVGIEALIGKVRFSRLGIKLAETHNKGYR 396
>sp|Q58865|YE70_METJA Hypothetical protein MJ1470
Length = 624
Score = 28.9 bits (63), Expect = 8.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 277 IEFKKQIYLQKCIGMIFGNELQIYG 351
I FK+ +Y+ K GM +G+ + +YG
Sbjct: 166 IYFKENVYIPKITGMKYGDSINLYG 190
>sp|O00874|DPOLA_LEIDO DNA polymerase alpha catalytic subunit
Length = 1339
Score = 28.9 bits (63), Expect = 8.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 248 ITEHIYKFQWTFLSEPTSLSCISVAPISEEDAET 147
+ EHI F LSE ++C + A + EE+AET
Sbjct: 1117 LCEHIQGFSNAQLSEAMGIACHTGAKLEEEEAET 1150
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,647,533
Number of Sequences: 369166
Number of extensions: 1280379
Number of successful extensions: 3729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3729
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)