Planaria EST Database


DrC_01644

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01644
         (543 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09266|YQD6_CAEEL  Hypothetical protein C32D5.6 in chromo...    29   8.4  
sp|Q8I8U7|TRA1_DROME  Transcription-associated protein 1 (dT...    29   8.4  
sp|P59496|END4_BUCBP  Probable endonuclease IV (Endodeoxyrib...    29   8.4  
>sp|Q09266|YQD6_CAEEL Hypothetical protein C32D5.6 in chromosome II
          Length = 578

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -2

Query: 494 NFSYFLKN*TCFVEQTQTLQHCQTRWFFPSIWKNNHNHVVEKYFSNNNLSANITSCNVKW 315
           NF+ F+K         QT ++C+     PS+W   +  V E++ S   +     S  +  
Sbjct: 158 NFASFIKGALNIRTCYQTYRYCEKLMNEPSVWVGRNKKVQEQFESGTRMGLGTFSLMLSV 217

Query: 314 LP 309
           LP
Sbjct: 218 LP 219
>sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1 (dTRA1)
          Length = 3803

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +2

Query: 8    EFMSIMGKKPIMVSFLSKAVRAGDQTSCRKSIHEGQYIPWSIWFDGWNEVFV 163
            EF ++ G   ++++ + ++  AG   S    +H+G    W++W D   ++F+
Sbjct: 3031 EFYALKG---LLLAQIGRSEEAGKSFSVAAQLHDGLTKAWAMWGDYMEQIFL 3079
>sp|P59496|END4_BUCBP Probable endonuclease IV (Endodeoxyribonuclease IV)
          Length = 278

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 395 NNHNHVVEKYFSNNNLSANITSCNVKWLPIIYTTNNSSIWYD 270
           + H+++ + Y   +++   I + N K  P+I  T N+ +W D
Sbjct: 229 DRHHNLGQGYIGKSSIRWIIRNINFKLFPMILETTNNKLWKD 270
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,969,296
Number of Sequences: 369166
Number of extensions: 1464282
Number of successful extensions: 4052
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4044
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)