Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C17
(543 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09266|YQD6_CAEEL Hypothetical protein C32D5.6 in chromo... 29 8.4
sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1 (dT... 29 8.4
sp|P59496|END4_BUCBP Probable endonuclease IV (Endodeoxyrib... 29 8.4
>sp|Q09266|YQD6_CAEEL Hypothetical protein C32D5.6 in chromosome II
Length = 578
Score = 28.9 bits (63), Expect = 8.4
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = -2
Query: 494 NFSYFLKN*TCFVEQTQTLQHCQTRWFFPSIWKNNHNHVVEKYFSNNNLSANITSCNVKW 315
NF+ F+K QT ++C+ PS+W + V E++ S + S +
Sbjct: 158 NFASFIKGALNIRTCYQTYRYCEKLMNEPSVWVGRNKKVQEQFESGTRMGLGTFSLMLSV 217
Query: 314 LP 309
LP
Sbjct: 218 LP 219
>sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1 (dTRA1)
Length = 3803
Score = 28.9 bits (63), Expect = 8.4
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = +2
Query: 8 EFMSIMGKKPIMVSFLSKAVRAGDQTSCRKSIHEGQYIPWSIWFDGWNEVFV 163
EF ++ G ++++ + ++ AG S +H+G W++W D ++F+
Sbjct: 3031 EFYALKG---LLLAQIGRSEEAGKSFSVAAQLHDGLTKAWAMWGDYMEQIFL 3079
>sp|P59496|END4_BUCBP Probable endonuclease IV (Endodeoxyribonuclease IV)
Length = 278
Score = 28.9 bits (63), Expect = 8.4
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 395 NNHNHVVEKYFSNNNLSANITSCNVKWLPIIYTTNNSSIWYD 270
+ H+++ + Y +++ I + N K P+I T N+ +W D
Sbjct: 229 DRHHNLGQGYIGKSSIRWIIRNINFKLFPMILETTNNKLWKD 270
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,969,296
Number of Sequences: 369166
Number of extensions: 1464282
Number of successful extensions: 4052
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4044
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)