Planaria EST Database


DrC_01643

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01643
         (270 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26268|ODPT_ASCSU  Pyruvate dehydrogenase E1 component al...   106   2e-23
sp|P26267|ODPA_ASCSU  Pyruvate dehydrogenase E1 component al...   101   6e-22
sp|P52899|ODPA_CAEEL  Probable pyruvate dehydrogenase E1 com...    99   3e-21
sp|P26284|ODPA_RAT  Pyruvate dehydrogenase E1 component alph...    92   3e-19
sp|P35486|ODPA_MOUSE  Pyruvate dehydrogenase E1 component al...    92   3e-19
sp|P08559|ODPA_HUMAN  Pyruvate dehydrogenase E1 component al...    92   3e-19
sp|P29804|ODPA_PIG  Pyruvate dehydrogenase E1 component alph...    92   3e-19
sp|Q5R490|ODPA_PONPY  Pyruvate dehydrogenase E1 component al...    92   3e-19
sp|Q8HXW9|ODPA_MACFA  Pyruvate dehydrogenase E1 component al...    92   3e-19
sp|P29803|ODPAT_HUMAN  Pyruvate dehydrogenase E1 component a...    90   1e-18
>sp|P26268|ODPT_ASCSU Pyruvate dehydrogenase E1 component alpha subunit type II,
           mitochondrial precursor (PDHE1-A)
          Length = 391

 Score =  106 bits (264), Expect = 2e-23
 Identities = 53/88 (60%), Positives = 62/88 (70%)
 Frame = +1

Query: 7   ATFLLHSYKLHKLDSGPAHETTCTKADGLDMLKKMFQIRRMETVCGNLYKEKLIRGFCHL 186
           ATF    +KLHKLDSGP      TK D L    +M  IRRMET  GNLYKEK +RGFCHL
Sbjct: 25  ATFQAKPFKLHKLDSGPDVNMHVTKEDALRYYTQMQTIRRMETAAGNLYKEKKVRGFCHL 84

Query: 187 SSGQKAVAVGIEAALIPVDSIITSYRCH 270
            SGQ+A AVG++AA+ P D+ IT+YRCH
Sbjct: 85  YSGQEACAVGMKAAMEPGDAAITAYRCH 112
>sp|P26267|ODPA_ASCSU Pyruvate dehydrogenase E1 component alpha subunit type I,
           mitochondrial precursor (PDHE1-A)
          Length = 396

 Score =  101 bits (251), Expect = 6e-22
 Identities = 49/88 (55%), Positives = 60/88 (68%)
 Frame = +1

Query: 7   ATFLLHSYKLHKLDSGPAHETTCTKADGLDMLKKMFQIRRMETVCGNLYKEKLIRGFCHL 186
           ATF    +KLHKLDSGP      TK D +    +M  IRRME+  GNLYKEK +RGFCHL
Sbjct: 30  ATFQTKPFKLHKLDSGPDINVHVTKEDAVHYYTQMLTIRRMESAAGNLYKEKKVRGFCHL 89

Query: 187 SSGQKAVAVGIEAALIPVDSIITSYRCH 270
            SGQ+A AVG +AA+   D+ +T+YRCH
Sbjct: 90  YSGQEACAVGTKAAMDAGDAAVTAYRCH 117
>sp|P52899|ODPA_CAEEL Probable pyruvate dehydrogenase E1 component alpha subunit,
           mitochondrial precursor (PDHE1-A)
          Length = 397

 Score = 99.0 bits (245), Expect = 3e-21
 Identities = 47/80 (58%), Positives = 58/80 (72%)
 Frame = +1

Query: 31  KLHKLDSGPAHETTCTKADGLDMLKKMFQIRRMETVCGNLYKEKLIRGFCHLSSGQKAVA 210
           KLHKLD+GP    T  + D L   + M  IRRME+  GNLYKEK IRGFCHL SGQ+A A
Sbjct: 36  KLHKLDNGPNTSVTLNREDALKYYRDMQVIRRMESAAGNLYKEKKIRGFCHLYSGQEACA 95

Query: 211 VGIEAALIPVDSIITSYRCH 270
           VG++AA+   D++IT+YRCH
Sbjct: 96  VGMKAAMTEGDAVITAYRCH 115
>sp|P26284|ODPA_RAT Pyruvate dehydrogenase E1 component alpha subunit, somatic form,
           mitochondrial precursor (PDHE1-A type I)
          Length = 390

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 43/90 (47%), Positives = 57/90 (63%)
 Frame = +1

Query: 1   DSATFLLHSYKLHKLDSGPAHETTCTKADGLDMLKKMFQIRRMETVCGNLYKEKLIRGFC 180
           + ATF +    LH+L+ GP   T  T+ DGL   + M  +RRME     LYK+K+IRGFC
Sbjct: 32  NDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFC 91

Query: 181 HLSSGQKAVAVGIEAALIPVDSIITSYRCH 270
           HL  GQ+A  VG+EA + P D +IT+YR H
Sbjct: 92  HLCDGQEACCVGLEAGINPTDHLITAYRAH 121
>sp|P35486|ODPA_MOUSE Pyruvate dehydrogenase E1 component alpha subunit, somatic form,
           mitochondrial precursor (PDHE1-A type I)
          Length = 390

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 43/90 (47%), Positives = 57/90 (63%)
 Frame = +1

Query: 1   DSATFLLHSYKLHKLDSGPAHETTCTKADGLDMLKKMFQIRRMETVCGNLYKEKLIRGFC 180
           + ATF +    LH+L+ GP   T  T+ DGL   + M  +RRME     LYK+K+IRGFC
Sbjct: 32  NDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFC 91

Query: 181 HLSSGQKAVAVGIEAALIPVDSIITSYRCH 270
           HL  GQ+A  VG+EA + P D +IT+YR H
Sbjct: 92  HLCDGQEACCVGLEAGINPTDHLITAYRAH 121
>sp|P08559|ODPA_HUMAN Pyruvate dehydrogenase E1 component alpha subunit, somatic form,
           mitochondrial precursor (PDHE1-A type I)
          Length = 390

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 43/90 (47%), Positives = 57/90 (63%)
 Frame = +1

Query: 1   DSATFLLHSYKLHKLDSGPAHETTCTKADGLDMLKKMFQIRRMETVCGNLYKEKLIRGFC 180
           + ATF +    LH+L+ GP   T  T+ DGL   + M  +RRME     LYK+K+IRGFC
Sbjct: 32  NDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFC 91

Query: 181 HLSSGQKAVAVGIEAALIPVDSIITSYRCH 270
           HL  GQ+A  VG+EA + P D +IT+YR H
Sbjct: 92  HLCDGQEACCVGLEAGINPTDHLITAYRAH 121
>sp|P29804|ODPA_PIG Pyruvate dehydrogenase E1 component alpha subunit, somatic form,
           mitochondrial precursor (PDHE1-A type I)
          Length = 389

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 43/90 (47%), Positives = 57/90 (63%)
 Frame = +1

Query: 1   DSATFLLHSYKLHKLDSGPAHETTCTKADGLDMLKKMFQIRRMETVCGNLYKEKLIRGFC 180
           + ATF +    LH+L+ GP   T  T+ DGL   + M  +RRME     LYK+K+IRGFC
Sbjct: 31  NDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFC 90

Query: 181 HLSSGQKAVAVGIEAALIPVDSIITSYRCH 270
           HL  GQ+A  VG+EA + P D +IT+YR H
Sbjct: 91  HLCDGQEACCVGLEAGINPTDHLITAYRAH 120
>sp|Q5R490|ODPA_PONPY Pyruvate dehydrogenase E1 component alpha subunit, somatic form,
           mitochondrial precursor (PDHE1-A type I)
          Length = 390

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 43/90 (47%), Positives = 57/90 (63%)
 Frame = +1

Query: 1   DSATFLLHSYKLHKLDSGPAHETTCTKADGLDMLKKMFQIRRMETVCGNLYKEKLIRGFC 180
           + ATF +    LH+L+ GP   T  T+ DGL   + M  +RRME     LYK+K+IRGFC
Sbjct: 32  NDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFC 91

Query: 181 HLSSGQKAVAVGIEAALIPVDSIITSYRCH 270
           HL  GQ+A  VG+EA + P D +IT+YR H
Sbjct: 92  HLCDGQEACCVGLEAGINPTDHLITAYRAH 121
>sp|Q8HXW9|ODPA_MACFA Pyruvate dehydrogenase E1 component alpha subunit, somatic form,
           mitochondrial precursor (PDHE1-A type I)
          Length = 390

 Score = 92.4 bits (228), Expect = 3e-19
 Identities = 43/90 (47%), Positives = 57/90 (63%)
 Frame = +1

Query: 1   DSATFLLHSYKLHKLDSGPAHETTCTKADGLDMLKKMFQIRRMETVCGNLYKEKLIRGFC 180
           + ATF +    LH+L+ GP   T  T+ DGL   + M  +RRME     LYK+K+IRGFC
Sbjct: 32  NDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFC 91

Query: 181 HLSSGQKAVAVGIEAALIPVDSIITSYRCH 270
           HL  GQ+A  VG+EA + P D +IT+YR H
Sbjct: 92  HLCDGQEACCVGLEAGINPTDHLITAYRAH 121
>sp|P29803|ODPAT_HUMAN Pyruvate dehydrogenase E1 component alpha subunit, testis-specific
           form, mitochondrial precursor (PDHE1-A type II)
          Length = 388

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 43/90 (47%), Positives = 56/90 (62%)
 Frame = +1

Query: 1   DSATFLLHSYKLHKLDSGPAHETTCTKADGLDMLKKMFQIRRMETVCGNLYKEKLIRGFC 180
           + ATF +    L+ L+ GP   T  T+A+GL   + M  +RRME     LYK+K IRGFC
Sbjct: 30  NDATFEIKKCDLYLLEEGPPVTTVLTRAEGLKYYRMMLTVRRMELKADQLYKQKFIRGFC 89

Query: 181 HLSSGQKAVAVGIEAALIPVDSIITSYRCH 270
           HL  GQ+A  VG+EA + P D +ITSYR H
Sbjct: 90  HLCDGQEACCVGLEAGINPSDHVITSYRAH 119
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,557,534
Number of Sequences: 369166
Number of extensions: 473482
Number of successful extensions: 948
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)