Planaria EST Database


DrC_01642

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01642
         (830 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P25656|YCY4_YEAST  Hypothetical 45.0 kDa protein in NOT1-...   114   3e-25
sp|P53740|YN8S_YEAST  Hypothetical 44.5 kDa protein in PET49...   106   7e-23
sp|P42838|YN63_YEAST  Hypothetical 47.4 kDa protein in EGT2-...   105   1e-22
sp|Q6GIK4|CLFA_STAAR  Clumping factor A precursor (Fibrinoge...    32   2.8  
sp|P55416|TRAB_RHISN  PROBABLE CONJUGAL TRANSFER PROTEIN TRAB      31   3.7  
sp|O95789|ZMYM6_HUMAN  Zinc finger MYM-type protein 6 (Zinc ...    31   3.7  
sp|Q02742|G6NT_HUMAN  Beta-1,3-galactosyl-O-glycosyl-glycopr...    31   4.8  
sp|Q6GB45|CLFA_STAAS  Clumping factor A precursor (Fibrinoge...    31   4.8  
sp|Q8NXJ1|CLFA_STAAW  Clumping factor A precursor (Fibrinoge...    31   4.8  
sp|Q5HHM8|CLFA_STAAC  Clumping factor A precursor (Fibrinoge...    31   4.8  
>sp|P25656|YCY4_YEAST Hypothetical 45.0 kDa protein in NOT1-MATAL2 intergenic region
          Length = 391

 Score =  114 bits (286), Expect = 3e-25
 Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 14/199 (7%)
 Frame = +3

Query: 6   QNHRQLIKSYDMSQLMGNIPTQT---SSCQPYLNDSTGKIYAPCGQMANVIFNDTFNLVV 176
           QNHR+ ++S+D  Q++G    +    +SC P +     KI  PCG +AN +FNDTF+ V+
Sbjct: 148 QNHRRYVQSFDTKQILGEPIKKDDLDTSCSP-IRSREDKIIYPCGLIANSMFNDTFSQVL 206

Query: 177 NTDNTSVPWSSVN--IALNSDKKRYGIPA-NWENTVKPVNWKVAANVRNPNAYAGD---- 335
           +  + +  ++  N  I+ + D+ R+     N  + V P NW      + P+ Y  +    
Sbjct: 207 SGIDDTEDYNLTNKHISWSIDRHRFKTTKYNASDIVPPPNWMK----KYPDGYTDENLPD 262

Query: 336 ----EELMVWMRPAALPKFRKLYRILNASNNFATGLPSGNYTININYSYPVKTFGGQKYF 503
               EE  VWMR AA PKF KL        N +  LP G Y +NI  +YP+  FGG K F
Sbjct: 263 IHTWEEFQVWMRTAAFPKFYKL-----TLKNESASLPKGKYQMNIELNYPISLFGGTKSF 317

Query: 504 IITNLSWVGGKNAALGILY 560
           ++T    +GG+N +LG+LY
Sbjct: 318 VLTTNGAIGGRNMSLGVLY 336
>sp|P53740|YN8S_YEAST Hypothetical 44.5 kDa protein in PET494-MSO1 intergenic region
          Length = 393

 Score =  106 bits (265), Expect = 7e-23
 Identities = 72/199 (36%), Positives = 98/199 (49%), Gaps = 14/199 (7%)
 Frame = +3

Query: 6   QNHRQLIKSYDMSQLMGNIPTQTS---SCQPYLNDSTGKIYAPCGQMANVIFNDTFNLVV 176
           QN+R+ ++S D+ QL G          +C P L     K   PCG +AN +FNDTF   +
Sbjct: 151 QNYREYVQSLDLDQLKGKALIGNDLDPNCDP-LRTVENKTIFPCGLIANSMFNDTFGTTL 209

Query: 177 NTDNTSVPW--SSVNIALNSDKKRYG-IPANWENTVKPVNWKVAANVRNPNAYAGD---- 335
              N +  +  ++  IA ++D  RYG    N  + V P NW        PN Y  D    
Sbjct: 210 TGVNDTADYLLTTKGIAWDTDSHRYGKTEYNASDIVPPPNWAKLF----PNGYTDDNIPD 265

Query: 336 ----EELMVWMRPAALPKFRKLYRILNASNNFATGLPSGNYTININYSYPVKTFGGQKYF 503
               E+  +WMR AALP F KL     A  N   GL  G Y  +I  +YPV++F G K F
Sbjct: 266 LQNWEQFKIWMRTAALPNFYKL-----AMKNETNGLGKGIYIADIELNYPVRSFYGTKSF 320

Query: 504 IITNLSWVGGKNAALGILY 560
           ++T  S +G  N ALGI+Y
Sbjct: 321 VLTTNSIIGAGNEALGIVY 339
>sp|P42838|YN63_YEAST Hypothetical 47.4 kDa protein in EGT2-KRE1 intergenic region
          Length = 414

 Score =  105 bits (263), Expect = 1e-22
 Identities = 72/199 (36%), Positives = 100/199 (50%), Gaps = 15/199 (7%)
 Frame = +3

Query: 9   NHRQLIKSYDMSQLMGNIPTQTS-------SCQPYLNDSTGKIYAPCGQMANVIFNDTFN 167
           NHR+ + S+   Q+ G   +  +       +C+P   ++ GKIY PCG +AN +FNDTF 
Sbjct: 185 NHRRYVLSFSEDQIRGEDASYETVHDATGINCKPLSKNADGKIYYPCGLIANSMFNDTFP 244

Query: 168 L-VVNTDNTSVPWSSVNIALN--SDKKRYG-IPANWENTVKPVNWKV----AANVRNPNA 323
           L + N  +TS  +S  N  +N  SDKKRY     N+     P  W+       N  N   
Sbjct: 245 LQLTNVGDTSNNYSLTNKGINWESDKKRYKKTKYNYTQIAPPPYWEKMYPDGYNETNIPD 304

Query: 324 YAGDEELMVWMRPAALPKFRKLYRILNASNNFATGLPSGNYTININYSYPVKTFGGQKYF 503
               EE   WMRP A  K  KL RI     N    LP+G Y ++I   +PV  F G+K  
Sbjct: 305 IQDWEEFQNWMRPGAFDKITKLIRI-----NKNDTLPAGEYQLDIGLHWPVLEFNGKKGI 359

Query: 504 IITNLSWVGGKNAALGILY 560
            +T+ S +GG+N  LGI+Y
Sbjct: 360 YLTHGSHLGGRNPFLGIVY 378
>sp|Q6GIK4|CLFA_STAAR Clumping factor A precursor (Fibrinogen-binding protein A)
           (Fibrinogen receptor A)
          Length = 1029

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = +3

Query: 90  YLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSVPWSSVNIALNSDKKRYGIPANWEN 269
           Y+N S   + AP     N+  N   N +++  NTS+    V+ A +  +  Y  P N+E+
Sbjct: 399 YVNPSGDNVIAPV-LTGNLKPNTDSNALIDAQNTSIKVYKVDNASDLSESYYVNPDNFED 457

Query: 270 TVKPVNWKVAANVRNPNAY 326
               VN        NPN Y
Sbjct: 458 VTDSVN----ITFPNPNQY 472
>sp|P55416|TRAB_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN TRAB
          Length = 387

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 404 CIE*LCYWPTFRKLYNQYQLFISS*NIWWTK 496
           C E L  WPT + +  +  L ++  N WWTK
Sbjct: 328 CYEQLVVWPTLQSMLYEPDLIVAVGNGWWTK 358
>sp|O95789|ZMYM6_HUMAN Zinc finger MYM-type protein 6 (Zinc finger protein 258)
          Length = 723

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 84  QPYLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSVPWSSVNIALNSDKKRYGIPANW 263
           Q +L  S G IY+ C     V F + F+    T++++VP S   + ++    R  +    
Sbjct: 331 QYHLAMSNGTIYSFCSSSCVVAFQNVFSKPKGTNSSAVPLSQGQVVVSPPSSRSAVSIGG 390

Query: 264 ENT 272
            NT
Sbjct: 391 GNT 393
>sp|Q02742|G6NT_HUMAN Beta-1,3-galactosyl-O-glycosyl-glycoprotein
           beta-1,6-N-acetylglucosaminyltransferase (Core 2
           branching enzyme) (Core2-GlcNAc-transferase) (C2GNT)
           (Core 2 GNT)
          Length = 428

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 6/171 (3%)
 Frame = +3

Query: 18  QLIKSYDMSQLMGNIPTQTSSCQPYLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSV 197
           +L+++  M Q    +   T S   YL    G   A C   +NV        VV       
Sbjct: 138 RLLRAIYMPQNFYCVHVDTKSEDSYLAAVMG--IASC--FSNVFVASRLESVVYAS---- 189

Query: 198 PWSSVNIALNSDKKRYGIPANWENTVK--PVNWKVAAN---VRNPNAYAGDEELMVWMRP 362
            WS V   LN  K  Y + ANW+  +    +++ +  N   VR      G+  L     P
Sbjct: 190 -WSRVQADLNCMKDLYAMSANWKYLINLCGMDFPIKTNLEIVRKLKLLMGENNLETERMP 248

Query: 363 A-ALPKFRKLYRILNASNNFATGLPSGNYTININYSYPVKTFGGQKYFIIT 512
           +    +++K Y ++N       G  +   T+ +        F G  YF+++
Sbjct: 249 SHKEERWKKRYEVVN-------GKLTNTGTVKMLPPLETPLFSGSAYFVVS 292
>sp|Q6GB45|CLFA_STAAS Clumping factor A precursor (Fibrinogen-binding protein A)
           (Fibrinogen receptor A)
          Length = 928

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +3

Query: 90  YLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSVPWSSVNIALNSDKKRYGIPANWEN 269
           Y+N S   + AP     N+  N   N +++  NTS+    V+ A +  +  +  P N+E+
Sbjct: 398 YVNPSGDNVIAPV-LTGNLKPNTDSNALIDQQNTSIKVYKVDNAADLSESYFVNPENFED 456

Query: 270 TVKPVNWKVAANVRNPNAY 326
               VN        NPN Y
Sbjct: 457 VTNSVN----ITFPNPNQY 471
>sp|Q8NXJ1|CLFA_STAAW Clumping factor A precursor (Fibrinogen-binding protein A)
           (Fibrinogen receptor A)
          Length = 946

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +3

Query: 90  YLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSVPWSSVNIALNSDKKRYGIPANWEN 269
           Y+N S   + AP     N+  N   N +++  NTS+    V+ A +  +  +  P N+E+
Sbjct: 398 YVNPSGDNVIAPV-LTGNLKPNTDSNALIDQQNTSIKVYKVDNAADLSESYFVNPENFED 456

Query: 270 TVKPVNWKVAANVRNPNAY 326
               VN        NPN Y
Sbjct: 457 VTNSVN----ITFPNPNQY 471
>sp|Q5HHM8|CLFA_STAAC Clumping factor A precursor (Fibrinogen-binding protein A)
           (Fibrinogen receptor A)
          Length = 933

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +3

Query: 90  YLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSVPWSSVNIALNSDKKRYGIPANWEN 269
           Y+N S   + AP     N+  N   N +++  NTS+    V+ A +  +  +  P N+E+
Sbjct: 399 YVNPSGDNVIAPV-LTGNLKPNTDSNALIDQQNTSIKVYKVDNAADLSESYFVNPENFED 457

Query: 270 TVKPVNWKVAANVRNPNAY 326
               VN        NPN Y
Sbjct: 458 VTNSVN----ITFPNPNQY 472
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,389,763
Number of Sequences: 369166
Number of extensions: 1737735
Number of successful extensions: 4033
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4026
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)