Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_C09
(830 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25656|YCY4_YEAST Hypothetical 45.0 kDa protein in NOT1-... 114 3e-25
sp|P53740|YN8S_YEAST Hypothetical 44.5 kDa protein in PET49... 106 7e-23
sp|P42838|YN63_YEAST Hypothetical 47.4 kDa protein in EGT2-... 105 1e-22
sp|Q6GIK4|CLFA_STAAR Clumping factor A precursor (Fibrinoge... 32 2.8
sp|P55416|TRAB_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN TRAB 31 3.7
sp|O95789|ZMYM6_HUMAN Zinc finger MYM-type protein 6 (Zinc ... 31 3.7
sp|Q02742|G6NT_HUMAN Beta-1,3-galactosyl-O-glycosyl-glycopr... 31 4.8
sp|Q6GB45|CLFA_STAAS Clumping factor A precursor (Fibrinoge... 31 4.8
sp|Q8NXJ1|CLFA_STAAW Clumping factor A precursor (Fibrinoge... 31 4.8
sp|Q5HHM8|CLFA_STAAC Clumping factor A precursor (Fibrinoge... 31 4.8
>sp|P25656|YCY4_YEAST Hypothetical 45.0 kDa protein in NOT1-MATAL2 intergenic region
Length = 391
Score = 114 bits (286), Expect = 3e-25
Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 14/199 (7%)
Frame = +3
Query: 6 QNHRQLIKSYDMSQLMGNIPTQT---SSCQPYLNDSTGKIYAPCGQMANVIFNDTFNLVV 176
QNHR+ ++S+D Q++G + +SC P + KI PCG +AN +FNDTF+ V+
Sbjct: 148 QNHRRYVQSFDTKQILGEPIKKDDLDTSCSP-IRSREDKIIYPCGLIANSMFNDTFSQVL 206
Query: 177 NTDNTSVPWSSVN--IALNSDKKRYGIPA-NWENTVKPVNWKVAANVRNPNAYAGD---- 335
+ + + ++ N I+ + D+ R+ N + V P NW + P+ Y +
Sbjct: 207 SGIDDTEDYNLTNKHISWSIDRHRFKTTKYNASDIVPPPNWMK----KYPDGYTDENLPD 262
Query: 336 ----EELMVWMRPAALPKFRKLYRILNASNNFATGLPSGNYTININYSYPVKTFGGQKYF 503
EE VWMR AA PKF KL N + LP G Y +NI +YP+ FGG K F
Sbjct: 263 IHTWEEFQVWMRTAAFPKFYKL-----TLKNESASLPKGKYQMNIELNYPISLFGGTKSF 317
Query: 504 IITNLSWVGGKNAALGILY 560
++T +GG+N +LG+LY
Sbjct: 318 VLTTNGAIGGRNMSLGVLY 336
>sp|P53740|YN8S_YEAST Hypothetical 44.5 kDa protein in PET494-MSO1 intergenic region
Length = 393
Score = 106 bits (265), Expect = 7e-23
Identities = 72/199 (36%), Positives = 98/199 (49%), Gaps = 14/199 (7%)
Frame = +3
Query: 6 QNHRQLIKSYDMSQLMGNIPTQTS---SCQPYLNDSTGKIYAPCGQMANVIFNDTFNLVV 176
QN+R+ ++S D+ QL G +C P L K PCG +AN +FNDTF +
Sbjct: 151 QNYREYVQSLDLDQLKGKALIGNDLDPNCDP-LRTVENKTIFPCGLIANSMFNDTFGTTL 209
Query: 177 NTDNTSVPW--SSVNIALNSDKKRYG-IPANWENTVKPVNWKVAANVRNPNAYAGD---- 335
N + + ++ IA ++D RYG N + V P NW PN Y D
Sbjct: 210 TGVNDTADYLLTTKGIAWDTDSHRYGKTEYNASDIVPPPNWAKLF----PNGYTDDNIPD 265
Query: 336 ----EELMVWMRPAALPKFRKLYRILNASNNFATGLPSGNYTININYSYPVKTFGGQKYF 503
E+ +WMR AALP F KL A N GL G Y +I +YPV++F G K F
Sbjct: 266 LQNWEQFKIWMRTAALPNFYKL-----AMKNETNGLGKGIYIADIELNYPVRSFYGTKSF 320
Query: 504 IITNLSWVGGKNAALGILY 560
++T S +G N ALGI+Y
Sbjct: 321 VLTTNSIIGAGNEALGIVY 339
>sp|P42838|YN63_YEAST Hypothetical 47.4 kDa protein in EGT2-KRE1 intergenic region
Length = 414
Score = 105 bits (263), Expect = 1e-22
Identities = 72/199 (36%), Positives = 100/199 (50%), Gaps = 15/199 (7%)
Frame = +3
Query: 9 NHRQLIKSYDMSQLMGNIPTQTS-------SCQPYLNDSTGKIYAPCGQMANVIFNDTFN 167
NHR+ + S+ Q+ G + + +C+P ++ GKIY PCG +AN +FNDTF
Sbjct: 185 NHRRYVLSFSEDQIRGEDASYETVHDATGINCKPLSKNADGKIYYPCGLIANSMFNDTFP 244
Query: 168 L-VVNTDNTSVPWSSVNIALN--SDKKRYG-IPANWENTVKPVNWKV----AANVRNPNA 323
L + N +TS +S N +N SDKKRY N+ P W+ N N
Sbjct: 245 LQLTNVGDTSNNYSLTNKGINWESDKKRYKKTKYNYTQIAPPPYWEKMYPDGYNETNIPD 304
Query: 324 YAGDEELMVWMRPAALPKFRKLYRILNASNNFATGLPSGNYTININYSYPVKTFGGQKYF 503
EE WMRP A K KL RI N LP+G Y ++I +PV F G+K
Sbjct: 305 IQDWEEFQNWMRPGAFDKITKLIRI-----NKNDTLPAGEYQLDIGLHWPVLEFNGKKGI 359
Query: 504 IITNLSWVGGKNAALGILY 560
+T+ S +GG+N LGI+Y
Sbjct: 360 YLTHGSHLGGRNPFLGIVY 378
>sp|Q6GIK4|CLFA_STAAR Clumping factor A precursor (Fibrinogen-binding protein A)
(Fibrinogen receptor A)
Length = 1029
Score = 31.6 bits (70), Expect = 2.8
Identities = 23/79 (29%), Positives = 35/79 (44%)
Frame = +3
Query: 90 YLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSVPWSSVNIALNSDKKRYGIPANWEN 269
Y+N S + AP N+ N N +++ NTS+ V+ A + + Y P N+E+
Sbjct: 399 YVNPSGDNVIAPV-LTGNLKPNTDSNALIDAQNTSIKVYKVDNASDLSESYYVNPDNFED 457
Query: 270 TVKPVNWKVAANVRNPNAY 326
VN NPN Y
Sbjct: 458 VTDSVN----ITFPNPNQY 472
>sp|P55416|TRAB_RHISN PROBABLE CONJUGAL TRANSFER PROTEIN TRAB
Length = 387
Score = 31.2 bits (69), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 404 CIE*LCYWPTFRKLYNQYQLFISS*NIWWTK 496
C E L WPT + + + L ++ N WWTK
Sbjct: 328 CYEQLVVWPTLQSMLYEPDLIVAVGNGWWTK 358
>sp|O95789|ZMYM6_HUMAN Zinc finger MYM-type protein 6 (Zinc finger protein 258)
Length = 723
Score = 31.2 bits (69), Expect = 3.7
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 84 QPYLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSVPWSSVNIALNSDKKRYGIPANW 263
Q +L S G IY+ C V F + F+ T++++VP S + ++ R +
Sbjct: 331 QYHLAMSNGTIYSFCSSSCVVAFQNVFSKPKGTNSSAVPLSQGQVVVSPPSSRSAVSIGG 390
Query: 264 ENT 272
NT
Sbjct: 391 GNT 393
>sp|Q02742|G6NT_HUMAN Beta-1,3-galactosyl-O-glycosyl-glycoprotein
beta-1,6-N-acetylglucosaminyltransferase (Core 2
branching enzyme) (Core2-GlcNAc-transferase) (C2GNT)
(Core 2 GNT)
Length = 428
Score = 30.8 bits (68), Expect = 4.8
Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 6/171 (3%)
Frame = +3
Query: 18 QLIKSYDMSQLMGNIPTQTSSCQPYLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSV 197
+L+++ M Q + T S YL G A C +NV VV
Sbjct: 138 RLLRAIYMPQNFYCVHVDTKSEDSYLAAVMG--IASC--FSNVFVASRLESVVYAS---- 189
Query: 198 PWSSVNIALNSDKKRYGIPANWENTVK--PVNWKVAAN---VRNPNAYAGDEELMVWMRP 362
WS V LN K Y + ANW+ + +++ + N VR G+ L P
Sbjct: 190 -WSRVQADLNCMKDLYAMSANWKYLINLCGMDFPIKTNLEIVRKLKLLMGENNLETERMP 248
Query: 363 A-ALPKFRKLYRILNASNNFATGLPSGNYTININYSYPVKTFGGQKYFIIT 512
+ +++K Y ++N G + T+ + F G YF+++
Sbjct: 249 SHKEERWKKRYEVVN-------GKLTNTGTVKMLPPLETPLFSGSAYFVVS 292
>sp|Q6GB45|CLFA_STAAS Clumping factor A precursor (Fibrinogen-binding protein A)
(Fibrinogen receptor A)
Length = 928
Score = 30.8 bits (68), Expect = 4.8
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +3
Query: 90 YLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSVPWSSVNIALNSDKKRYGIPANWEN 269
Y+N S + AP N+ N N +++ NTS+ V+ A + + + P N+E+
Sbjct: 398 YVNPSGDNVIAPV-LTGNLKPNTDSNALIDQQNTSIKVYKVDNAADLSESYFVNPENFED 456
Query: 270 TVKPVNWKVAANVRNPNAY 326
VN NPN Y
Sbjct: 457 VTNSVN----ITFPNPNQY 471
>sp|Q8NXJ1|CLFA_STAAW Clumping factor A precursor (Fibrinogen-binding protein A)
(Fibrinogen receptor A)
Length = 946
Score = 30.8 bits (68), Expect = 4.8
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +3
Query: 90 YLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSVPWSSVNIALNSDKKRYGIPANWEN 269
Y+N S + AP N+ N N +++ NTS+ V+ A + + + P N+E+
Sbjct: 398 YVNPSGDNVIAPV-LTGNLKPNTDSNALIDQQNTSIKVYKVDNAADLSESYFVNPENFED 456
Query: 270 TVKPVNWKVAANVRNPNAY 326
VN NPN Y
Sbjct: 457 VTNSVN----ITFPNPNQY 471
>sp|Q5HHM8|CLFA_STAAC Clumping factor A precursor (Fibrinogen-binding protein A)
(Fibrinogen receptor A)
Length = 933
Score = 30.8 bits (68), Expect = 4.8
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = +3
Query: 90 YLNDSTGKIYAPCGQMANVIFNDTFNLVVNTDNTSVPWSSVNIALNSDKKRYGIPANWEN 269
Y+N S + AP N+ N N +++ NTS+ V+ A + + + P N+E+
Sbjct: 399 YVNPSGDNVIAPV-LTGNLKPNTDSNALIDQQNTSIKVYKVDNAADLSESYFVNPENFED 457
Query: 270 TVKPVNWKVAANVRNPNAY 326
VN NPN Y
Sbjct: 458 VTNSVN----ITFPNPNQY 472
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,389,763
Number of Sequences: 369166
Number of extensions: 1737735
Number of successful extensions: 4033
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4026
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)