Planaria EST Database


DrC_01637

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01637
         (808 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O00291|HIP1_HUMAN  Huntingtin interacting protein 1 (HIP-I)     87   4e-17
sp|Q02328|SLAP2_CAEEL  Protein SLA2 homolog                        72   1e-12
sp|O75146|HIP1R_HUMAN  Huntingtin-interacting protein 1-rela...    71   4e-12
sp|Q9JKY5|HIP1R_MOUSE  Huntingtin interacting protein 1 rela...    70   9e-12
sp|Q9P6L5|SLA2_SCHPO  Endocytosis protein end4 (SLA2 protein...    54   7e-07
sp|P33338|SLA2_YEAST  Protein SLA2 (Transmembrane protein MOP2)    35   0.18 
sp|Q10432|YQ37_SCHPO  Hypothetical protein C188.07 in chromo...    32   1.6  
sp|P70498|PLD2_RAT  Phospholipase D2 (PLD 2) (Choline phosph...    32   1.6  
sp|Q9PQA5|MRAZ_UREPA  Protein mraZ                                 30   5.9  
sp|P40537|ULP2_YEAST  Ubiquitin-like-specific protease 2           30   7.8  
>sp|O00291|HIP1_HUMAN Huntingtin interacting protein 1 (HIP-I)
          Length = 1030

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 47/98 (47%), Positives = 62/98 (63%)
 Frame = +2

Query: 5    QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLTQ 184
            QLV +S+VKA+  S N   L QAS+GV+ AT  V+A+  +    +EE  + +FS++TLTQ
Sbjct: 909  QLVAASKVKADKDSPNLAQLQQASRGVNQATAGVVASTISGKSQIEETDNMDFSSMTLTQ 968

Query: 185  AKRLEMDSQVRVLELENDXXXXXXXXXXXXXXHYQLAG 298
             KR EMDSQVRVLELEN+              HY+LAG
Sbjct: 969  IKRQEMDSQVRVLELENELQKERQKLGELRKKHYELAG 1006
>sp|Q02328|SLAP2_CAEEL Protein SLA2 homolog
          Length = 927

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 41/97 (42%), Positives = 55/97 (56%)
 Frame = +2

Query: 5    QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLTQ 184
            QL VSSRVKA+  S     LS A+K V+  T +V+A  KN    L ++GS +FS L+L  
Sbjct: 818  QLFVSSRVKADKDSSKLDALSVAAKAVNQNTAQVVAAVKNGQTTLNDEGSLDFSYLSLHA 877

Query: 185  AKRLEMDSQVRVLELENDXXXXXXXXXXXXXXHYQLA 295
            AK+ EM+SQV++LELE                HY +A
Sbjct: 878  AKKEEMESQVKMLELEQSLNQERAKLAALRKQHYHMA 914
>sp|O75146|HIP1R_HUMAN Huntingtin-interacting protein 1-related protein (Hip1-related) (Hip
            12)
          Length = 1068

 Score = 70.9 bits (172), Expect = 4e-12
 Identities = 37/106 (34%), Positives = 60/106 (56%)
 Frame = +2

Query: 5    QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLTQ 184
            QLV +S+VKAN  S +   L + S+ V++    V+A+ K+  + +E++ + +FS L+L +
Sbjct: 916  QLVAASKVKANKHSPHLSRLQECSRTVNERAANVVASTKSGQEQIEDRDTMDFSGLSLIK 975

Query: 185  AKRLEMDSQVRVLELENDXXXXXXXXXXXXXXHYQLAGESADQNDK 322
             K+ EM++QVRVLELE                HY LAG S    ++
Sbjct: 976  LKKQEMETQVRVLELEKTLEAERMRLGELRKQHYVLAGASGSPGEE 1021
>sp|Q9JKY5|HIP1R_MOUSE Huntingtin interacting protein 1 related (Hip1-related)
          Length = 1068

 Score = 69.7 bits (169), Expect = 9e-12
 Identities = 36/98 (36%), Positives = 58/98 (59%)
 Frame = +2

Query: 5    QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLTQ 184
            QLV +S+VKAN +S +   L + S+ V++    V+A+ K+  + +E++ + +FS L+L +
Sbjct: 916  QLVAASKVKANKNSPHLSRLQECSRTVNERAANVVASTKSGQEQIEDRDTMDFSGLSLIK 975

Query: 185  AKRLEMDSQVRVLELENDXXXXXXXXXXXXXXHYQLAG 298
             K+ EM++QVRVLELE                HY LAG
Sbjct: 976  LKKQEMETQVRVLELEKTLEAERVRLGELRKQHYVLAG 1013
>sp|Q9P6L5|SLA2_SCHPO Endocytosis protein end4 (SLA2 protein homolog)
          Length = 1092

 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 28/78 (35%), Positives = 50/78 (64%)
 Frame = +2

Query: 5    QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLTQ 184
            QLV +SRVKAN +S+   +L  A+K V++A   ++   ++     +E    +FS+L + +
Sbjct: 994  QLVAASRVKANFASKVQDHLEDAAKAVTEACKALVRQVESVALKAKEVQHEDFSSLGVHE 1053

Query: 185  AKRLEMDSQVRVLELEND 238
             +R E++ QV++L+LEND
Sbjct: 1054 YRRKEIEQQVQILKLEND 1071
>sp|P33338|SLA2_YEAST Protein SLA2 (Transmembrane protein MOP2)
          Length = 968

 Score = 35.4 bits (80), Expect = 0.18
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
 Frame = +2

Query: 5    QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLT- 181
            QLV +SRVK ++ S+    L   SK V+DA   +     + M ++E+  S +     L  
Sbjct: 867  QLVAASRVKTSIHSKAQDKLEHCSKDVTDACRSL---GNHVMGMIEDDHSTSQQQQPLDF 923

Query: 182  ----QAKRLEMDSQVRVLELE 232
                  K  EM+ QV +L+LE
Sbjct: 924  TSEHTLKTAEMEQQVEILKLE 944
>sp|Q10432|YQ37_SCHPO Hypothetical protein C188.07 in chromosome III
          Length = 735

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +2

Query: 2   TQLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAM----KVLEEQGSYNFSN 169
           TQL+ + +  A+  +  +QN S  +   S    K+ A  K       KV+EE   YN S 
Sbjct: 637 TQLLKTQKEDADFITNQYQNASTFAAEQSKEVAKLQAECKRLQAINSKVMEEVKVYNDSR 696

Query: 170 LTLTQAKRLEMDSQVRVLE 226
           +    AK   ++  +++LE
Sbjct: 697 VEALLAKVSSLEETLKILE 715
>sp|P70498|PLD2_RAT Phospholipase D2 (PLD 2) (Choline phosphatase 2)
           (Phosphatidylcholine-hydrolyzing phospholipase D2)
           (PLD1C) (rPLD2)
          Length = 933

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 95  LHQKHLYWLEKDFENFVMKDWL 30
           L   H +WL KD+ N + KDW+
Sbjct: 499 LSHNHFFWLGKDYSNLITKDWV 520
>sp|Q9PQA5|MRAZ_UREPA Protein mraZ
          Length = 145

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
 Frame = +2

Query: 5   QLVVSSRVKANLSSQNFQNLSQASKGVSDAT-----GKVIANAKNAMKVLEEQGSYNFSN 169
           +++V S+VKA L    F  LS    G  D        + + N  N +  +  + + N + 
Sbjct: 15  RMLVPSKVKATLGEAIFVYLSLGFDGNIDMRLESEFNQFVNNINNLL--IGSKEARNLTR 72

Query: 170 LTLTQAKRLEMDSQVRVLELEN 235
           L L+Q  ++E+DS  R+L  +N
Sbjct: 73  LILSQTYKIEIDSASRILIPQN 94
>sp|P40537|ULP2_YEAST Ubiquitin-like-specific protease 2
          Length = 1034

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 690 NLFQ*SIIDFPLKIKFKWFICIISNLNRL 776
           +LF    +  P+ I + WF CII+NL+ +
Sbjct: 515 DLFSKKYVVIPINISYHWFSCIITNLDAI 543
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,011,105
Number of Sequences: 369166
Number of extensions: 1271614
Number of successful extensions: 2866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2865
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)