Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_B02
(808 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00291|HIP1_HUMAN Huntingtin interacting protein 1 (HIP-I) 87 4e-17
sp|Q02328|SLAP2_CAEEL Protein SLA2 homolog 72 1e-12
sp|O75146|HIP1R_HUMAN Huntingtin-interacting protein 1-rela... 71 4e-12
sp|Q9JKY5|HIP1R_MOUSE Huntingtin interacting protein 1 rela... 70 9e-12
sp|Q9P6L5|SLA2_SCHPO Endocytosis protein end4 (SLA2 protein... 54 7e-07
sp|P33338|SLA2_YEAST Protein SLA2 (Transmembrane protein MOP2) 35 0.18
sp|Q10432|YQ37_SCHPO Hypothetical protein C188.07 in chromo... 32 1.6
sp|P70498|PLD2_RAT Phospholipase D2 (PLD 2) (Choline phosph... 32 1.6
sp|Q9PQA5|MRAZ_UREPA Protein mraZ 30 5.9
sp|P40537|ULP2_YEAST Ubiquitin-like-specific protease 2 30 7.8
>sp|O00291|HIP1_HUMAN Huntingtin interacting protein 1 (HIP-I)
Length = 1030
Score = 87.4 bits (215), Expect = 4e-17
Identities = 47/98 (47%), Positives = 62/98 (63%)
Frame = +2
Query: 5 QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLTQ 184
QLV +S+VKA+ S N L QAS+GV+ AT V+A+ + +EE + +FS++TLTQ
Sbjct: 909 QLVAASKVKADKDSPNLAQLQQASRGVNQATAGVVASTISGKSQIEETDNMDFSSMTLTQ 968
Query: 185 AKRLEMDSQVRVLELENDXXXXXXXXXXXXXXHYQLAG 298
KR EMDSQVRVLELEN+ HY+LAG
Sbjct: 969 IKRQEMDSQVRVLELENELQKERQKLGELRKKHYELAG 1006
>sp|Q02328|SLAP2_CAEEL Protein SLA2 homolog
Length = 927
Score = 72.4 bits (176), Expect = 1e-12
Identities = 41/97 (42%), Positives = 55/97 (56%)
Frame = +2
Query: 5 QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLTQ 184
QL VSSRVKA+ S LS A+K V+ T +V+A KN L ++GS +FS L+L
Sbjct: 818 QLFVSSRVKADKDSSKLDALSVAAKAVNQNTAQVVAAVKNGQTTLNDEGSLDFSYLSLHA 877
Query: 185 AKRLEMDSQVRVLELENDXXXXXXXXXXXXXXHYQLA 295
AK+ EM+SQV++LELE HY +A
Sbjct: 878 AKKEEMESQVKMLELEQSLNQERAKLAALRKQHYHMA 914
>sp|O75146|HIP1R_HUMAN Huntingtin-interacting protein 1-related protein (Hip1-related) (Hip
12)
Length = 1068
Score = 70.9 bits (172), Expect = 4e-12
Identities = 37/106 (34%), Positives = 60/106 (56%)
Frame = +2
Query: 5 QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLTQ 184
QLV +S+VKAN S + L + S+ V++ V+A+ K+ + +E++ + +FS L+L +
Sbjct: 916 QLVAASKVKANKHSPHLSRLQECSRTVNERAANVVASTKSGQEQIEDRDTMDFSGLSLIK 975
Query: 185 AKRLEMDSQVRVLELENDXXXXXXXXXXXXXXHYQLAGESADQNDK 322
K+ EM++QVRVLELE HY LAG S ++
Sbjct: 976 LKKQEMETQVRVLELEKTLEAERMRLGELRKQHYVLAGASGSPGEE 1021
>sp|Q9JKY5|HIP1R_MOUSE Huntingtin interacting protein 1 related (Hip1-related)
Length = 1068
Score = 69.7 bits (169), Expect = 9e-12
Identities = 36/98 (36%), Positives = 58/98 (59%)
Frame = +2
Query: 5 QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLTQ 184
QLV +S+VKAN +S + L + S+ V++ V+A+ K+ + +E++ + +FS L+L +
Sbjct: 916 QLVAASKVKANKNSPHLSRLQECSRTVNERAANVVASTKSGQEQIEDRDTMDFSGLSLIK 975
Query: 185 AKRLEMDSQVRVLELENDXXXXXXXXXXXXXXHYQLAG 298
K+ EM++QVRVLELE HY LAG
Sbjct: 976 LKKQEMETQVRVLELEKTLEAERVRLGELRKQHYVLAG 1013
>sp|Q9P6L5|SLA2_SCHPO Endocytosis protein end4 (SLA2 protein homolog)
Length = 1092
Score = 53.5 bits (127), Expect = 7e-07
Identities = 28/78 (35%), Positives = 50/78 (64%)
Frame = +2
Query: 5 QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLTQ 184
QLV +SRVKAN +S+ +L A+K V++A ++ ++ +E +FS+L + +
Sbjct: 994 QLVAASRVKANFASKVQDHLEDAAKAVTEACKALVRQVESVALKAKEVQHEDFSSLGVHE 1053
Query: 185 AKRLEMDSQVRVLELEND 238
+R E++ QV++L+LEND
Sbjct: 1054 YRRKEIEQQVQILKLEND 1071
>sp|P33338|SLA2_YEAST Protein SLA2 (Transmembrane protein MOP2)
Length = 968
Score = 35.4 bits (80), Expect = 0.18
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = +2
Query: 5 QLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAMKVLEEQGSYNFSNLTLT- 181
QLV +SRVK ++ S+ L SK V+DA + + M ++E+ S + L
Sbjct: 867 QLVAASRVKTSIHSKAQDKLEHCSKDVTDACRSL---GNHVMGMIEDDHSTSQQQQPLDF 923
Query: 182 ----QAKRLEMDSQVRVLELE 232
K EM+ QV +L+LE
Sbjct: 924 TSEHTLKTAEMEQQVEILKLE 944
>sp|Q10432|YQ37_SCHPO Hypothetical protein C188.07 in chromosome III
Length = 735
Score = 32.3 bits (72), Expect = 1.6
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 2 TQLVVSSRVKANLSSQNFQNLSQASKGVSDATGKVIANAKNAM----KVLEEQGSYNFSN 169
TQL+ + + A+ + +QN S + S K+ A K KV+EE YN S
Sbjct: 637 TQLLKTQKEDADFITNQYQNASTFAAEQSKEVAKLQAECKRLQAINSKVMEEVKVYNDSR 696
Query: 170 LTLTQAKRLEMDSQVRVLE 226
+ AK ++ +++LE
Sbjct: 697 VEALLAKVSSLEETLKILE 715
>sp|P70498|PLD2_RAT Phospholipase D2 (PLD 2) (Choline phosphatase 2)
(Phosphatidylcholine-hydrolyzing phospholipase D2)
(PLD1C) (rPLD2)
Length = 933
Score = 32.3 bits (72), Expect = 1.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 95 LHQKHLYWLEKDFENFVMKDWL 30
L H +WL KD+ N + KDW+
Sbjct: 499 LSHNHFFWLGKDYSNLITKDWV 520
>sp|Q9PQA5|MRAZ_UREPA Protein mraZ
Length = 145
Score = 30.4 bits (67), Expect = 5.9
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +2
Query: 5 QLVVSSRVKANLSSQNFQNLSQASKGVSDAT-----GKVIANAKNAMKVLEEQGSYNFSN 169
+++V S+VKA L F LS G D + + N N + + + + N +
Sbjct: 15 RMLVPSKVKATLGEAIFVYLSLGFDGNIDMRLESEFNQFVNNINNLL--IGSKEARNLTR 72
Query: 170 LTLTQAKRLEMDSQVRVLELEN 235
L L+Q ++E+DS R+L +N
Sbjct: 73 LILSQTYKIEIDSASRILIPQN 94
>sp|P40537|ULP2_YEAST Ubiquitin-like-specific protease 2
Length = 1034
Score = 30.0 bits (66), Expect = 7.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 690 NLFQ*SIIDFPLKIKFKWFICIISNLNRL 776
+LF + P+ I + WF CII+NL+ +
Sbjct: 515 DLFSKKYVVIPINISYHWFSCIITNLDAI 543
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,011,105
Number of Sequences: 369166
Number of extensions: 1271614
Number of successful extensions: 2866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2865
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)